Use new PDB ID to get mmCIF file

salilab · Aug 15, 2024 · cd224c0 · cd224c0
1 parent 85e9e2b
commit cd224c0
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Showing 4 changed files with 4 additions and 4 deletions.
diff --git a/rnapolii/modeling/.template.deposition.ipynb b/rnapolii/modeling/.template.deposition.ipynb
@@ -1056,7 +1056,7 @@
     "except ImportError:\n",
     "    import urllib2  # python2\n",
     "\n",
-    "fh = urllib2.urlopen('https://pdb-dev.wwpdb.org/cif/PDBDEV_00000014.cif')\n",
+    "fh = urllib2.urlopen('https://pdb-dev.wwpdb.org/cif/8zze.cif')\n",
     "s, = ihm.reader.read(fh)\n",
     "print(s.title, s.restraints, s.ensembles, s.state_groups)"
    ]

diff --git a/rnapolii/modeling/deposition-colab.ipynb b/rnapolii/modeling/deposition-colab.ipynb
@@ -1048,7 +1048,7 @@
         "except ImportError:\n",
         "    import urllib2  # python2\n",
         "\n",
-        "fh = urllib2.urlopen('https://pdb-dev.wwpdb.org/cif/PDBDEV_00000014.cif')\n",
+        "fh = urllib2.urlopen('https://pdb-dev.wwpdb.org/cif/8zze.cif')\n",
         "s, = ihm.reader.read(fh)\n",
         "print(s.title, s.restraints, s.ensembles, s.state_groups)"
       ]

diff --git a/rnapolii/modeling/deposition.ipynb b/rnapolii/modeling/deposition.ipynb
@@ -1020,7 +1020,7 @@
         "except ImportError:\n",
         "    import urllib2  # python2\n",
         "\n",
-        "fh = urllib2.urlopen('https://pdb-dev.wwpdb.org/cif/PDBDEV_00000014.cif')\n",
+        "fh = urllib2.urlopen('https://pdb-dev.wwpdb.org/cif/8zze.cif')\n",
         "s, = ihm.reader.read(fh)\n",
         "print(s.title, s.restraints, s.ensembles, s.state_groups)"
       ]

diff --git a/rnapolii/modeling/deposition.py b/rnapolii/modeling/deposition.py
@@ -338,6 +338,6 @@
 except ImportError:
     import urllib2  # python2
 
-fh = urllib2.urlopen('https://pdb-dev.wwpdb.org/cif/PDBDEV_00000014.cif')
+fh = urllib2.urlopen('https://pdb-dev.wwpdb.org/cif/8zze.cif')
 s, = ihm.reader.read(fh)
 print(s.title, s.restraints, s.ensembles, s.state_groups)