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Update gh-pages to output generated at f11544a
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deeenes committed Nov 21, 2023
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2 changes: 1 addition & 1 deletion .buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: ff3c321811964ba38bf4738ce17b04e6
config: 1e95a2511fbe62187a828c4a586f4dda
tags: 645f666f9bcd5a90fca523b33c5a78b7
20 changes: 16 additions & 4 deletions _modules/index.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Overview: module code &#8212; pypath 0.16.3 documentation</title>
<title>Overview: module code &#8212; pypath 0.16.4 documentation</title>



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<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
<script src="../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>

<script src="../_static/documentation_options.js?v=4a1014be"></script>
<script src="../_static/documentation_options.js?v=81998473"></script>
<script src="../_static/doctools.js?v=888ff710"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../_static/clipboard.min.js?v=a7894cd8"></script>
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<li><a href="pypath/internals/refs.html">pypath.internals.refs</a></li>
<li><a href="pypath/internals/resource.html">pypath.internals.resource</a></li>
<li><a href="pypath/legacy/db_categories.html">pypath.legacy.db_categories</a></li>
<li><a href="pypath/resources.html">pypath.resources</a></li>
<li><a href="pypath/omnipath.html">pypath.omnipath</a></li>
<ul><li><a href="pypath/omnipath/app.html">pypath.omnipath.app</a></li>
<li><a href="pypath/omnipath/databases.html">pypath.omnipath.databases</a></li>
<ul><li><a href="pypath/omnipath/databases/define.html">pypath.omnipath.databases.define</a></li>
</ul><li><a href="pypath/omnipath/export.html">pypath.omnipath.export</a></li>
<li><a href="pypath/omnipath/param.html">pypath.omnipath.param</a></li>
<li><a href="pypath/omnipath/server/build.html">pypath.omnipath.server.build</a></li>
<li><a href="pypath/omnipath/server/generate_about_page.html">pypath.omnipath.server.generate_about_page</a></li>
<li><a href="pypath/omnipath/server/legacy.html">pypath.omnipath.server.legacy</a></li>
<li><a href="pypath/omnipath/server/run.html">pypath.omnipath.server.run</a></li>
</ul><li><a href="pypath/resources.html">pypath.resources</a></li>
<ul><li><a href="pypath/resources/controller.html">pypath.resources.controller</a></li>
<li><a href="pypath/resources/descriptions.html">pypath.resources.descriptions</a></li>
<li><a href="pypath/resources/licenses.html">pypath.resources.licenses</a></li>
<li><a href="pypath/resources/network.html">pypath.resources.network</a></li>
</ul><li><a href="pypath/share/cache.html">pypath.share.cache</a></li>
Expand All @@ -727,7 +738,8 @@ <h1>All modules for which code is available</h1>
<li><a href="pypath/visual/igraph_drawing.html">pypath.visual.igraph_drawing</a></li>
<ul><li><a href="pypath/visual/igraph_drawing/edge.html">pypath.visual.igraph_drawing.edge</a></li>
<li><a href="pypath/visual/igraph_drawing/vertex.html">pypath.visual.igraph_drawing.vertex</a></li>
</ul></ul></ul>
</ul><li><a href="pypath/visual/plot.html">pypath.visual.plot</a></li>
</ul></ul>

</article>

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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pypath &#8212; pypath 0.16.3 documentation</title>
<title>pypath &#8212; pypath 0.16.4 documentation</title>



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<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
<script src="../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>

<script src="../_static/documentation_options.js?v=4a1014be"></script>
<script src="../_static/documentation_options.js?v=81998473"></script>
<script src="../_static/doctools.js?v=888ff710"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../_static/clipboard.min.js?v=a7894cd8"></script>
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<span class="kn">from</span> <span class="nn">pypath._metadata</span> <span class="kn">import</span> <span class="n">metadata</span> <span class="k">as</span> <span class="n">_metadata</span>
<span class="kn">from</span> <span class="nn">pypath.share</span> <span class="kn">import</span> <span class="n">session</span> <span class="k">as</span> <span class="n">_session_mod</span>

<span class="n">_module_root</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="vm">__file__</span><span class="p">))</span>
<span class="n">_settings_yaml</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_module_root</span><span class="p">,</span> <span class="s1">&#39;data&#39;</span><span class="p">,</span> <span class="s1">&#39;settings.yaml&#39;</span><span class="p">)</span>
<span class="n">session</span> <span class="o">=</span> <span class="n">_session_mod</span><span class="o">.</span><span class="n">_session</span><span class="p">(</span><span class="s1">&#39;pypath&#39;</span><span class="p">,</span> <span class="n">config</span> <span class="o">=</span> <span class="n">_settings_yaml</span><span class="p">)</span>
<span class="n">session</span> <span class="o">=</span> <span class="n">_session_mod</span><span class="o">.</span><span class="n">_session</span><span class="p">(</span><span class="s1">&#39;pypath&#39;</span><span class="p">,</span> <span class="n">paths</span> <span class="o">=</span> <span class="s1">&#39;pypath_common&#39;</span><span class="p">)</span>


<div class="viewcode-block" id="log">
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<span class="s1">&#39;</span><span class="se">\t</span><span class="s1">- session ID: `</span><span class="si">%s</span><span class="s1">`</span><span class="se">\n</span><span class="s1">&#39;</span>
<span class="s1">&#39;</span><span class="se">\t</span><span class="s1">- working directory: `</span><span class="si">%s</span><span class="s1">`</span><span class="se">\n</span><span class="s1">&#39;</span>
<span class="s1">&#39;</span><span class="se">\t</span><span class="s1">- logfile: `</span><span class="si">%s</span><span class="s1">`</span><span class="se">\n</span><span class="s1">&#39;</span>
<span class="s1">&#39;</span><span class="se">\t</span><span class="s1">- config: `</span><span class="si">%s</span><span class="s1">`</span><span class="se">\n</span><span class="s1">&#39;</span>
<span class="s1">&#39;</span><span class="se">\t</span><span class="s1">- config: </span><span class="se">\n\t\t</span><span class="s1">- </span><span class="si">%s</span><span class="se">\n</span><span class="s1">&#39;</span>
<span class="s1">&#39;</span><span class="se">\t</span><span class="s1">- pypath version: </span><span class="si">%s</span><span class="se">\n</span><span class="s1">&#39;</span>
<span class="s1">&#39;</span><span class="se">\t</span><span class="s1">- imported from: `</span><span class="si">%s</span><span class="s1">`</span><span class="se">\n</span><span class="s1">&#39;</span>
<span class="s1">&#39;</span><span class="se">\t</span><span class="s1">- Python version: </span><span class="si">%s</span><span class="se">\n</span><span class="s1">&#39;</span>
<span class="s1">&#39;</span><span class="se">\t</span><span class="s1">- Platform: </span><span class="si">%s</span><span class="s1">&#39;</span><span class="o">%</span> <span class="p">(</span>
<span class="n">_session_mod</span><span class="o">.</span><span class="n">session</span><span class="p">()</span><span class="o">.</span><span class="n">label</span><span class="p">,</span>
<span class="n">os</span><span class="o">.</span><span class="n">getcwd</span><span class="p">(),</span>
<span class="n">_session_mod</span><span class="o">.</span><span class="n">log</span><span class="p">()</span><span class="o">.</span><span class="n">fname</span><span class="p">,</span>
<span class="n">_settings_yaml</span><span class="p">,</span>
<span class="s1">&#39;</span><span class="se">\n\t\t</span><span class="s1">- &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
<span class="nb">map</span><span class="p">(</span><span class="nb">str</span><span class="p">,</span> <span class="n">_session_mod</span><span class="o">.</span><span class="n">session</span><span class="p">()</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">_parsed</span><span class="p">)</span>
<span class="p">),</span>
<span class="n">__version__</span><span class="p">,</span>
<span class="n">_module_root</span><span class="p">,</span>
<span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="vm">__file__</span><span class="p">),</span>
<span class="n">sys</span><span class="o">.</span><span class="n">version</span><span class="p">,</span>
<span class="n">platform</span><span class="o">.</span><span class="n">platform</span><span class="p">(),</span>
<span class="p">)</span>
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4 changes: 2 additions & 2 deletions _modules/pypath/core/annot.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pypath.core.annot &#8212; pypath 0.16.3 documentation</title>
<title>pypath.core.annot &#8212; pypath 0.16.4 documentation</title>



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<link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
<script src="../../../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>

<script src="../../../_static/documentation_options.js?v=4a1014be"></script>
<script src="../../../_static/documentation_options.js?v=81998473"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../../_static/clipboard.min.js?v=a7894cd8"></script>
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pypath.core.attrs &#8212; pypath 0.16.3 documentation</title>
<title>pypath.core.attrs &#8212; pypath 0.16.4 documentation</title>



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<link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
<script src="../../../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>

<script src="../../../_static/documentation_options.js?v=4a1014be"></script>
<script src="../../../_static/documentation_options.js?v=81998473"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../../_static/clipboard.min.js?v=a7894cd8"></script>
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pypath.core.common &#8212; pypath 0.16.3 documentation</title>
<title>pypath.core.common &#8212; pypath 0.16.4 documentation</title>



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<link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
<script src="../../../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>

<script src="../../../_static/documentation_options.js?v=4a1014be"></script>
<script src="../../../_static/documentation_options.js?v=81998473"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../../_static/clipboard.min.js?v=a7894cd8"></script>
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4 changes: 2 additions & 2 deletions _modules/pypath/core/complex.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pypath.core.complex &#8212; pypath 0.16.3 documentation</title>
<title>pypath.core.complex &#8212; pypath 0.16.4 documentation</title>



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<link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
<script src="../../../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>

<script src="../../../_static/documentation_options.js?v=4a1014be"></script>
<script src="../../../_static/documentation_options.js?v=81998473"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../../_static/clipboard.min.js?v=a7894cd8"></script>
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pypath.core.entity &#8212; pypath 0.16.3 documentation</title>
<title>pypath.core.entity &#8212; pypath 0.16.4 documentation</title>



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<link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
<script src="../../../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>

<script src="../../../_static/documentation_options.js?v=4a1014be"></script>
<script src="../../../_static/documentation_options.js?v=81998473"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pypath.core.enz_sub &#8212; pypath 0.16.3 documentation</title>
<title>pypath.core.enz_sub &#8212; pypath 0.16.4 documentation</title>



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<link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
<script src="../../../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=365ca57ee442770a23c6"></script>

<script src="../../../_static/documentation_options.js?v=4a1014be"></script>
<script src="../../../_static/documentation_options.js?v=81998473"></script>
<script src="../../../_static/doctools.js?v=888ff710"></script>
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pypath.core.evidence &#8212; pypath 0.16.3 documentation</title>
<title>pypath.core.evidence &#8212; pypath 0.16.4 documentation</title>



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<script src="../../../_static/documentation_options.js?v=4a1014be"></script>
<script src="../../../_static/documentation_options.js?v=81998473"></script>
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pypath.core.interaction &#8212; pypath 0.16.3 documentation</title>
<title>pypath.core.interaction &#8212; pypath 0.16.4 documentation</title>



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<script src="../../../_static/documentation_options.js?v=4a1014be"></script>
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pypath.core.intercell &#8212; pypath 0.16.3 documentation</title>
<title>pypath.core.intercell &#8212; pypath 0.16.4 documentation</title>



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<script src="../../../_static/documentation_options.js?v=4a1014be"></script>
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pypath.core.network &#8212; pypath 0.16.3 documentation</title>
<title>pypath.core.network &#8212; pypath 0.16.4 documentation</title>



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<link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
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<script src="../../../_static/documentation_options.js?v=4a1014be"></script>
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pypath.inputs &#8212; pypath 0.16.3 documentation</title>
<title>pypath.inputs &#8212; pypath 0.16.4 documentation</title>



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<link rel="preload" as="script" href="../../_static/scripts/pydata-sphinx-theme.js?digest=365ca57ee442770a23c6" />
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