.gitignore

# Created by https://www.gitignore.io/api/python,jupyternotebooks,visualstudiocode
# Edit at https://www.gitignore.io/?templates=python,jupyternotebooks,visualstudiocode

### JupyterNotebooks ###
# gitignore template for Jupyter Notebooks
# website: http://jupyter.org/

.ipynb_checkpoints
*/.ipynb_checkpoints/*

# IPython
profile_default/
ipython_config.py

# Remove previous ipynb_checkpoints
#   git rm -r .ipynb_checkpoints/

### Python ###
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# pyenv
.python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

# celery beat schedule file
celerybeat-schedule

# SageMath parsed files
*.sage.py

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# Mr Developer
.mr.developer.cfg
.project
.pydevproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

### VisualStudioCode ###
.vscode/*
!.vscode/settings.json
!.vscode/tasks.json
!.vscode/launch.json
!.vscode/extensions.json

### VisualStudioCode Patch ###
# Ignore all local history of files
.history

# End of https://www.gitignore.io/api/python,jupyternotebooks,visualstudiocode

.DS_Store
.idea/
.venv
docs/docs-branch
evotuning.log
examples/*/simpledocs/_build
examples/docker/output
examples/tucker/cath-domain-list-v4_3_0.txt
examples/tucker/tucker_cath
examples/mmseqs_simple/mmseqs_simple
examples/mmseqs_profile/mmseqs_profile
models/
notebooks/*.csv
notebooks/*.h5
private/
sync.sh
test-data/mutagenesis/mutagenesis
webserver/konsti