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Cache warped source#176

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bogovicj merged 46 commits intomastersaalfeldlab/bigwarp:masterfrom warpedSourceCachingsaalfeldlab/bigwarp:warpedSourceCachingCopy head branch name to clipboardOct 3, 2024

+1,286-331

Commits

Commits on May 29, 2024

• perf(wip): toward export of quantized dfields

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Commits on May 30, 2024

• perf(wip): toward reading and writing quantized transforms

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• style: code formatting

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Commits on Jun 12, 2024

• fix: n5 dfield, treat invfield group as inverse

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• fix: generic RealComposite compilation issue

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Commits on Jun 14, 2024

• chore: bump n5 artifact versions

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• fix: make n5 source loading consistent with n5 viewer

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Commits on Jun 27, 2024

• wip: toward fixing n5 export when an offset exists

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Commits on Jun 28, 2024

• fix: serializing ngff affines

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• fix(wip): toward fixing n5 export

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• feat(wip): more flexible bigwarp exporter

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Commits on Jul 3, 2024

• fix/perf: use N5Viewer method for opening multiscale data

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• fix: offset typo in ApplyBigWarpPlugin

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Commits on Jul 10, 2024

• fix: correct input/output space for TPS transform export

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• style: ApplyBigwarpPlugin formatting

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• Merge branch 'fix-n5-export' of github.com:saalfeldlab/bigwarp into fix-n5-export

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• Merge branch 'master' into fix-n5-export

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Commits on Sep 11, 2024

• feat: add BoundingBoxEstimation.estimateInterval

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• wip: toward caching sources with a fixed transformation

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• fix: bounding box issue for cached warped source

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• feat: cached fixed-transform source and singleton SharedQueue

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Commits on Sep 12, 2024

• Merge branch 'fix-n5-export' into warpedSourceCaching

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Commits on Sep 18, 2024

• feat: store on-the-fly transfored source for export and use it

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• style: misc code style

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Commits on Sep 19, 2024

• fix: bounding box minMaxInterval should not round/floor

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• style: BigWarpInit minor cleanup

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Commits on Sep 27, 2024

• fix: getMovingSourceForExport

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• test: more helpers in BigWarpTestUtils

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• fix: ImagePlusLoader handles origin

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• fix/test: bigwarp apply with an offset in target fov

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Commits on Sep 30, 2024

• chore(pom): bump imglib2, imglib2-algorithm version

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• test: BigWarpTestUtils add more helper methods to

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• test: add BigWarpTransformCacheTests

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• fix: ApplyBigWarpPlugin bug in specified physical fov

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• style: be quiet

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• fix: BitWarpInit allow null target ImagePlus

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• fix: ApplyBigwarpPlugin logic that checks what target src can be null

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Commits on Oct 3, 2024

• refactor: use imglib2's new getType() method

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• fix: add add NumericType constraint to openAsSourceMulti

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• feat: de-duplicate export code used by UI

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• feat: remove pixel/physical distinction for landmark fov params

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• fix/test: add test of export using landmarks for fov

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• chore(pom): clean up pinned versions

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• fix: add missing dep

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• feat/tes: ApplyBigwarpPlugin expose show option

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• doc: javadoc fixes

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