add intrinsic net analysis to main_sim.ipynb #286
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name: Unit test | |
on: | |
push: | |
branches: ['**'] | |
pull_request: | |
branches: ['**'] | |
env: | |
PYTHONPATH: C:\nrn_test\lib\python | |
NEURONHOME: C:\nrn_test | |
jobs: | |
build: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [windows-latest] | |
python-version: [3.7, 3.8] | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
activate-environment: test | |
python-version: ${{ matrix.python-version }} | |
- name: Install Neuron on Windows separately | |
shell: cmd | |
run: | | |
powershell -command "gh release download --repo https://github.com/neuronsimulator/nrn --pattern '*.exe' --output nrn-setup.exe" | |
start /b /wait .\nrn-setup.exe /S /D=C:\nrn_test | |
powershell -command "'C:\nrn_test\bin' >> $env:GITHUB_PATH" | |
python -c "import neuron" | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
- name: Install dependencies and HNN | |
shell: cmd | |
run: | | |
python -m pip install --upgrade pip | |
pip install flake8 pytest pytest-cov | |
pip install psutil joblib | |
pip install --verbose .[gui] | |
- name: Test with pytest | |
shell: cmd | |
run: | | |
python -m pytest . --cov=hnn_core hnn_core/tests/ --cov-report=xml |