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test: Switch from 'exec_with_output' to 'run' #13353

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Run time

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Job	Run time
clippy	2m 1s
lint-docs	1m 57s
lockfile	6s
rustfmt	12s
stale-label	10s
build_std	3m 27s
check-version-bump	11m 25s
docs	2m 55s
resolver	3m 12s
Tests Linux x86_64 stable	14m 26s
test_gitoxide	9m 38s
Tests Linux x86_64 beta	14m 33s
Tests Linux x86_64 nightly	14m 9s
Tests macOS aarch64 stable	11m 17s
msrv	2m 13s
Tests macOS x86_64 nightly	40m 9s
Tests macOS aarch64 nightly	13m 36s
Tests Windows x86_64 MSVC stable	25m 30s
Tests Windows x86_64 gnu nightly	30m 13s
conclusion	1s
	3h 21m 10s