Merge pull request #399 from rseng/update/software-2024-11-17

Update from update/software-2024-11-17

database/github/Bios4Biol/intronSeeker/metadata.json

@@ -0,0 +1,37 @@
+{
+    "parser": "github",
+    "uid": "github/Bios4Biol/intronSeeker",
+    "url": "https://github.com/Bios4Biol/intronSeeker",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.14017260",
+        "name": "intronSeeker",
+        "url": "https://github.com/Bios4Biol/intronSeeker",
+        "full_name": "Bios4Biol/intronSeeker",
+        "html_url": "https://github.com/Bios4Biol/intronSeeker",
+        "description": "IntronSeeker identifies potentially retained introns in de novo RNA-seq assembly  in order to quantify and remove them.",
+        "created_at": "2024-03-12T09:20:07Z",
+        "updated_at": "2024-10-30T13:16:48Z",
+        "clone_url": "https://github.com/Bios4Biol/intronSeeker.git",
+        "size": 618833,
+        "stargazers_count": 1,
+        "watchers_count": 1,
+        "language": "HTML",
+        "open_issues_count": 5,
+        "license": {
+            "key": "gpl-3.0",
+            "name": "GNU General Public License v3.0",
+            "spdx_id": "GPL-3.0",
+            "url": "https://api.github.com/licenses/gpl-3.0",
+            "node_id": "MDc6TGljZW5zZTk="
+        },
+        "subscribers_count": 2,
+        "owner": {
+            "html_url": "https://github.com/Bios4Biol",
+            "avatar_url": "https://avatars.githubusercontent.com/u/38938508?v=4",
+            "login": "Bios4Biol",
+            "type": "User"
+        },
+        "timestamp": "2024-11-17 00:48:06.771906",
+        "avatar": "https://avatars.githubusercontent.com/u/38938508?v=4"
+    }
+}

database/github/BirkhoffG/jax-relax/metadata.json

@@ -0,0 +1,38 @@
+{
+    "parser": "github",
+    "uid": "github/BirkhoffG/jax-relax",
+    "url": "https://github.com/BirkhoffG/jax-relax",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.13957805",
+        "name": "jax-relax",
+        "url": "https://github.com/BirkhoffG/jax-relax",
+        "full_name": "BirkhoffG/jax-relax",
+        "html_url": "https://github.com/BirkhoffG/jax-relax",
+        "description": "Recourse Explanation Library in JAX",
+        "created_at": "2023-07-23T21:56:11Z",
+        "updated_at": "2024-11-12T18:20:38Z",
+        "clone_url": "https://github.com/BirkhoffG/jax-relax.git",
+        "homepage": "https://birkhoffg.github.io/jax-relax/",
+        "size": 17900,
+        "stargazers_count": 6,
+        "watchers_count": 6,
+        "language": "Jupyter Notebook",
+        "open_issues_count": 6,
+        "license": {
+            "key": "apache-2.0",
+            "name": "Apache License 2.0",
+            "spdx_id": "Apache-2.0",
+            "url": "https://api.github.com/licenses/apache-2.0",
+            "node_id": "MDc6TGljZW5zZTI="
+        },
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/BirkhoffG",
+            "avatar_url": "https://avatars.githubusercontent.com/u/26811230?v=4",
+            "login": "BirkhoffG",
+            "type": "User"
+        },
+        "timestamp": "2024-11-17 00:48:11.803019",
+        "avatar": "https://avatars.githubusercontent.com/u/26811230?v=4"
+    }
+}

database/github/DavidLapous/multipers/metadata.json

@@ -0,0 +1,49 @@
+{
+    "parser": "github",
+    "uid": "github/DavidLapous/multipers",
+    "url": "https://github.com/DavidLapous/multipers",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.14042221",
+        "name": "multipers",
+        "url": "https://github.com/DavidLapous/multipers",
+        "full_name": "DavidLapous/multipers",
+        "html_url": "https://github.com/DavidLapous/multipers",
+        "description": "[NeurIPS2023,ICML2024] Multiparameter Persistence for Machine Learning ",
+        "created_at": "2021-12-14T13:01:53Z",
+        "updated_at": "2024-11-14T15:04:53Z",
+        "clone_url": "https://github.com/DavidLapous/multipers.git",
+        "homepage": "https://davidlapous.github.io/multipers/",
+        "size": 54024,
+        "stargazers_count": 15,
+        "watchers_count": 15,
+        "language": "C++",
+        "open_issues_count": 12,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/DavidLapous",
+            "avatar_url": "https://avatars.githubusercontent.com/u/15857585?v=4",
+            "login": "DavidLapous",
+            "type": "User"
+        },
+        "topics": [
+            "persistent-homology",
+            "topological-data-analysis",
+            "tda",
+            "python",
+            "cpp",
+            "cython",
+            "neurips-2023",
+            "icml-2024",
+            "multiparameter-persistence"
+        ],
+        "timestamp": "2024-11-17 00:48:10.140606",
+        "avatar": "https://avatars.githubusercontent.com/u/15857585?v=4"
+    }
+}

database/github/LandSciTech/ccviR/metadata.json

@@ -0,0 +1,38 @@
+{
+    "parser": "github",
+    "uid": "github/LandSciTech/ccviR",
+    "url": "https://github.com/LandSciTech/ccviR",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.14170051",
+        "name": "ccviR",
+        "url": "https://github.com/LandSciTech/ccviR",
+        "full_name": "LandSciTech/ccviR",
+        "html_url": "https://github.com/LandSciTech/ccviR",
+        "description": "Implement NatureServe climate change vulnerability index in R",
+        "created_at": "2021-01-18T15:21:58Z",
+        "updated_at": "2024-11-15T19:38:06Z",
+        "clone_url": "https://github.com/LandSciTech/ccviR.git",
+        "homepage": "https://landscitech.github.io/ccviR/",
+        "size": 77677,
+        "stargazers_count": 3,
+        "watchers_count": 3,
+        "language": "R",
+        "open_issues_count": 28,
+        "license": {
+            "key": "other",
+            "name": "Other",
+            "spdx_id": "NOASSERTION",
+            "url": null,
+            "node_id": "MDc6TGljZW5zZTA="
+        },
+        "subscribers_count": 2,
+        "owner": {
+            "html_url": "https://github.com/LandSciTech",
+            "avatar_url": "https://avatars.githubusercontent.com/u/41919529?v=4",
+            "login": "LandSciTech",
+            "type": "Organization"
+        },
+        "timestamp": "2024-11-17 00:48:06.400220",
+        "avatar": "https://avatars.githubusercontent.com/u/41919529?v=4"
+    }
+}

database/github/MDU-PHL/abritamr/metadata.json

@@ -0,0 +1,33 @@
+{
+    "parser": "github",
+    "uid": "github/MDU-PHL/abritamr",
+    "url": "https://github.com/MDU-PHL/abritamr",
+    "data": {
+        "name": "abritamr",
+        "url": "https://github.com/MDU-PHL/abritamr",
+        "full_name": "MDU-PHL/abritamr",
+        "html_url": "https://github.com/MDU-PHL/abritamr",
+        "private": false,
+        "description": "A pipeline for running AMRfinderPlus and collating results into functional classes",
+        "created_at": "2019-09-21T03:59:24Z",
+        "updated_at": "2024-10-23T19:05:02Z",
+        "clone_url": "https://github.com/MDU-PHL/abritamr.git",
+        "homepage": null,
+        "size": 94390,
+        "stargazers_count": 71,
+        "watchers_count": 71,
+        "language": "Python",
+        "open_issues_count": 10,
+        "license": null,
+        "subscribers_count": 14,
+        "owner": {
+            "html_url": "https://github.com/MDU-PHL",
+            "avatar_url": "https://avatars.githubusercontent.com/u/11035838?v=4",
+            "login": "MDU-PHL",
+            "type": "Organization"
+        },
+        "topics": [],
+        "timestamp": "2024-11-17 00:48:18.909496",
+        "avatar": "https://avatars.githubusercontent.com/u/11035838?v=4"
+    }
+}

database/github/Romea/aroco/metadata.json

@@ -0,0 +1,39 @@
+{
+    "parser": "github",
+    "uid": "github/Romea/aroco",
+    "url": "https://github.com/Romea/aroco",
+    "data": {
+        "name": "aroco",
+        "url": "https://github.com/Romea/aroco",
+        "full_name": "Romea/aroco",
+        "html_url": "https://github.com/Romea/aroco",
+        "private": false,
+        "description": null,
+        "created_at": "2023-05-31T09:11:59Z",
+        "updated_at": "2024-11-12T09:40:46Z",
+        "clone_url": "https://github.com/Romea/aroco.git",
+        "homepage": null,
+        "size": 1744,
+        "stargazers_count": 0,
+        "watchers_count": 0,
+        "language": "Python",
+        "open_issues_count": 0,
+        "license": {
+            "key": "apache-2.0",
+            "name": "Apache License 2.0",
+            "spdx_id": "Apache-2.0",
+            "url": "https://api.github.com/licenses/apache-2.0",
+            "node_id": "MDc6TGljZW5zZTI="
+        },
+        "subscribers_count": 0,
+        "owner": {
+            "html_url": "https://github.com/Romea",
+            "avatar_url": "https://avatars.githubusercontent.com/u/20208303?v=4",
+            "login": "Romea",
+            "type": "Organization"
+        },
+        "topics": [],
+        "timestamp": "2024-11-17 00:52:18.818853",
+        "avatar": "https://avatars.githubusercontent.com/u/20208303?v=4"
+    }
+}

database/github/Romea/robucar/metadata.json

@@ -0,0 +1,39 @@
+{
+    "parser": "github",
+    "uid": "github/Romea/robucar",
+    "url": "https://github.com/Romea/robucar",
+    "data": {
+        "name": "robucar",
+        "url": "https://github.com/Romea/robucar",
+        "full_name": "Romea/robucar",
+        "html_url": "https://github.com/Romea/robucar",
+        "private": false,
+        "description": null,
+        "created_at": "2023-06-02T08:08:12Z",
+        "updated_at": "2024-11-12T10:07:15Z",
+        "clone_url": "https://github.com/Romea/robucar.git",
+        "homepage": null,
+        "size": 966,
+        "stargazers_count": 0,
+        "watchers_count": 0,
+        "language": "C++",
+        "open_issues_count": 0,
+        "license": {
+            "key": "apache-2.0",
+            "name": "Apache License 2.0",
+            "spdx_id": "Apache-2.0",
+            "url": "https://api.github.com/licenses/apache-2.0",
+            "node_id": "MDc6TGljZW5zZTI="
+        },
+        "subscribers_count": 0,
+        "owner": {
+            "html_url": "https://github.com/Romea",
+            "avatar_url": "https://avatars.githubusercontent.com/u/20208303?v=4",
+            "login": "Romea",
+            "type": "Organization"
+        },
+        "topics": [],
+        "timestamp": "2024-11-17 00:52:19.293914",
+        "avatar": "https://avatars.githubusercontent.com/u/20208303?v=4"
+    }
+}

database/github/WaterFutures/EPyT-Flow/metadata.json

@@ -0,0 +1,45 @@
+{
+    "parser": "github",
+    "uid": "github/WaterFutures/EPyT-Flow",
+    "url": "https://github.com/WaterFutures/EPyT-Flow",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.14091815",
+        "name": "EPyT-Flow",
+        "url": "https://github.com/WaterFutures/EPyT-Flow",
+        "full_name": "WaterFutures/EPyT-Flow",
+        "html_url": "https://github.com/WaterFutures/EPyT-Flow",
+        "description": "A high-level interface designed for the easy generation of hydraulic and water quality scenario data.",
+        "created_at": "2024-01-04T14:07:18Z",
+        "updated_at": "2024-11-16T07:45:16Z",
+        "clone_url": "https://github.com/WaterFutures/EPyT-Flow.git",
+        "homepage": "https://epyt-flow.readthedocs.io/en/stable",
+        "size": 3247,
+        "stargazers_count": 18,
+        "watchers_count": 18,
+        "language": "Python",
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 7,
+        "owner": {
+            "html_url": "https://github.com/WaterFutures",
+            "avatar_url": "https://avatars.githubusercontent.com/u/149570313?v=4",
+            "login": "WaterFutures",
+            "type": "Organization"
+        },
+        "topics": [
+            "epanet",
+            "epanet-python-toolkit",
+            "python",
+            "simulation",
+            "water",
+            "water-distribution-networks"
+        ],
+        "timestamp": "2024-11-17 00:48:12.574925",
+        "avatar": "https://avatars.githubusercontent.com/u/149570313?v=4"
+    }
+}

database/github/alan-turing-institute/setvis/metadata.json

@@ -0,0 +1,47 @@
+{
+    "parser": "github",
+    "uid": "github/alan-turing-institute/setvis",
+    "url": "https://github.com/alan-turing-institute/setvis",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.14009355",
+        "name": "setvis",
+        "url": "https://github.com/alan-turing-institute/setvis",
+        "full_name": "alan-turing-institute/setvis",
+        "html_url": "https://github.com/alan-turing-institute/setvis",
+        "description": "A tool for visualising set membership and patterns of missingness in data",
+        "created_at": "2021-07-02T12:41:40Z",
+        "updated_at": "2024-11-14T10:34:47Z",
+        "clone_url": "https://github.com/alan-turing-institute/setvis.git",
+        "homepage": "https://setvis.readthedocs.io",
+        "size": 3906,
+        "stargazers_count": 4,
+        "watchers_count": 4,
+        "language": "Python",
+        "open_issues_count": 14,
+        "license": {
+            "key": "apache-2.0",
+            "name": "Apache License 2.0",
+            "spdx_id": "Apache-2.0",
+            "url": "https://api.github.com/licenses/apache-2.0",
+            "node_id": "MDc6TGljZW5zZTI="
+        },
+        "subscribers_count": 10,
+        "owner": {
+            "html_url": "https://github.com/alan-turing-institute",
+            "avatar_url": "https://avatars.githubusercontent.com/u/18304793?v=4",
+            "login": "alan-turing-institute",
+            "type": "Organization"
+        },
+        "topics": [
+            "hut23",
+            "hut23-845",
+            "bokeh",
+            "jupyter-notebook",
+            "missing-data",
+            "python",
+            "set-visualization"
+        ],
+        "timestamp": "2024-11-17 00:48:13.849714",
+        "avatar": "https://avatars.githubusercontent.com/u/18304793?v=4"
+    }
+}