merging new_fit branch - v2.0

.gitignore

@@ -21,6 +21,9 @@ VBBinaryLensingLibrary_wrapper.so
 source/AdaptiveContouring/*.o
 source/AdaptiveContouring/*.so
 
+# additional code in example_16/
+examples/example_16/corner.py
+
 # Sphinx files
 *.doctree
 docs/_sources/

README.md

@@ -4,7 +4,7 @@
 
 [**Detailed documentation: https://rpoleski.github.io/MulensModel/**](https://rpoleski.github.io/MulensModel/)
 
-[Latest release: 1.17.2](https://github.com/rpoleski/MulensModel/releases/latest) and we're working on further developing the code.
+[Latest release: 2.0.0](https://github.com/rpoleski/MulensModel/releases/latest) and we're working on further developing the code.
 
 MulensModel can generate a microlensing light curve for a given set of microlensing parameters, fit that light curve to some data, and return a chi2 value. That chi2 can then be input into an arbitrary likelihood function to find the best-fit parameters.
 
@@ -45,5 +45,5 @@ Alternatively, you can run makefiles: go to `source/VBBL/` and run `make`, then
 ---
 [![astropy](http://img.shields.io/badge/powered%20by-AstroPy-orange.svg?style=flat)](http://www.astropy.org/)
 
-file revised Oct 2020
+file revised Aug 2021
 

data/photometry_files/KB180003/00README.txt

@@ -1,3 +1,3 @@
 These datasets have been modified from the public online KMT
 data. They are truncated at HJD 2458210. to support the example in
-use_case_32_fix_blending.py
+use_case_34_fix_blending.py

data/photometry_files/KB180003/KMTA12_I.pysis

@@ -6,7 +6,7 @@
 8176.19064     -612.5483      256.0534   19.6452  0.134512
 8177.18745     -791.1303      278.7444   19.5604  0.135486
 8177.18934     -628.2445      251.9303   19.6375  0.131212
-8177.23803  -524033.7371   641208.1339   nan  nan
+#8177.23803  -524033.7371   641208.1339   nan  nan
 8178.18820     -495.7178      238.5896   19.7045  0.132241
 8178.21120     -531.4036      210.0963   19.6861  0.113520
 8179.18080    -9917.4566      440.1944   17.8480  0.042367
@@ -106,7 +106,7 @@
 8245.00697      249.2171      196.8425   20.1857  0.173102
 8245.00831      127.1369      197.0802   20.0908  0.157704
 8245.09759    -1572.2028      260.4464   19.2518  0.093480
-8246.00534    -5372.2369     7639.4390   nan  nan
+#8246.00534    -5372.2369     7639.4390   nan  nan
 8246.00671    -1453.4051      562.6914   19.2934  0.222372
 8246.06221       -1.2911      160.9814   19.9991  0.116192
 8247.26492       15.3072      160.7184   20.0105  0.117287
@@ -196,7 +196,7 @@
 8288.90988     -207.6110      222.8618   19.8663  0.144149
 8289.08348     -775.7854      408.6993   19.5674  0.206404
 8289.93283      -66.2395      239.1099   19.9555  0.169851
-8290.09071      950.5163     1360.9201   nan  nan
+#8290.09071      950.5163     1360.9201   nan  nan
 8290.89904     -677.1727      246.1077   19.6137  0.125059
 8291.02215      -40.6910      176.0092   19.9725  0.124422
 8291.89752      200.9105      207.0218   20.1472  0.175922
@@ -211,12 +211,12 @@
 8295.02510      103.4290      267.6682   20.0733  0.216364
 8295.21498     -652.5859      542.8505   19.6256  0.301711
 8295.87501       44.3151      652.4553   20.0308  0.598027
-8296.06682     1192.8610      779.4899   nan  nan
+#8296.06682     1192.8610      779.4899   nan  nan
 8299.85799      723.2023      283.3266   20.6616  0.432875
 8299.85954     -491.1828      246.9213   19.7069  0.137482
 8299.86106     -867.0635      253.5820   19.5262  0.118528
 8300.04729     -509.3274      377.9659   19.6974  0.216102
-8300.85742     1106.7523     1649.9265   nan  nan
+#8300.85742     1106.7523     1649.9265   nan  nan
 8301.04647      464.6696      229.8030   20.3767  0.249274
 8302.08366    -1278.7876      236.2586   19.3577  0.093487
 8302.12462       44.0328      208.0312   20.0306  0.157472

docs/.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 91416e407b7d5b5c6d2cca68a981432b
+config: 966a4d38055b40c0f3363ddf416e532a
 tags: 645f666f9bcd5a90fca523b33c5a78b7

docs/MulensModel.binarylens.html

@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>MulensModel.binarylens module &#8212; MulensModel 1.17.1 documentation</title>
+    <title>MulensModel.binarylens module &#8212; MulensModel 2.0.0 documentation</title>
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -37,7 +37,7 @@
 <dl class="py class">
 <dt id="MulensModel.binarylens.BinaryLens">
 <em class="property">class </em><code class="sig-prename descclassname">MulensModel.binarylens.</code><code class="sig-name descname">BinaryLens</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">mass_1</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">mass_2</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">separation</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#MulensModel.binarylens.BinaryLens" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.8)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.9)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
 <p>The binary lens equation - its solutions, images, parities,
 magnifications, etc.</p>
 <p>The binary lens equation is a 5th order complex polynomial.</p>

docs/MulensModel.caustics.html

@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>MulensModel.caustics module &#8212; MulensModel 1.17.1 documentation</title>
+    <title>MulensModel.caustics module &#8212; MulensModel 2.0.0 documentation</title>
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -37,7 +37,7 @@
 <dl class="py class">
 <dt id="MulensModel.caustics.Caustics">
 <em class="property">class </em><code class="sig-prename descclassname">MulensModel.caustics.</code><code class="sig-name descname">Caustics</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">q</span></em>, <em class="sig-param"><span class="n">s</span></em><span class="sig-paren">)</span><a class="headerlink" href="#MulensModel.caustics.Caustics" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.8)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.9)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
 <p>Class for the caustic structure corresponding to a given (<em>q</em>, <em>s</em>),
 i.e. mass ratio and separation. Implemented for 2-body lenses only.</p>
 <dl class="simple">
@@ -100,7 +100,7 @@
 <dl class="py class">
 <dt id="MulensModel.caustics.Caustics.CriticalCurve">
 <em class="property">class </em><code class="sig-name descname">CriticalCurve</code><a class="headerlink" href="#MulensModel.caustics.Caustics.CriticalCurve" title="Permalink to this definition">¶</a></dt>
-<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.8)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.9)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
 <p>Internal class of <a class="reference internal" href="#MulensModel.caustics.Caustics" title="MulensModel.caustics.Caustics"><code class="xref py py-class docutils literal notranslate"><span class="pre">Caustics</span></code></a>. Defines the critical
 curve (in the lens plane). Origin is center of mass with
 larger mass on the left (<em>q</em> &lt; 1).</p>

docs/MulensModel.coordinates.html

@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>MulensModel.coordinates module &#8212; MulensModel 1.17.1 documentation</title>
+    <title>MulensModel.coordinates module &#8212; MulensModel 2.0.0 documentation</title>
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>