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joelnitta committed Jan 20, 2022
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Package: canaper
Title: Categorical Analysis of Neo- And Paleo-Endemism
Version: 0.0.1
Version: 0.0.2
Authors@R:
c(
person(given = "Joel H.",
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22 changes: 14 additions & 8 deletions NEWS.md
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canaper 0.0.2
===============

### BUG FIXES

* [Fix bug](https://github.com/joelnitta/canaper/commit/acb40172c2d5ffb04e13519c6cad7c6d00fa451a) where `cpr_rand_test()` was failing to return identical results after `set.seed()` when parallelization is on

canaper 0.0.1
===============

### NEW FEATURES

* Add `cpr_rand_comm()` function for generating a random community
2f3318c1d62f401d7c99bdcc16c64194359c3fbe
* [Add `cpr_rand_comm()` function](https://github.com/joelnitta/canaper/commit/2f3318c1d62f401d7c99bdcc16c64194359c3fbe) for generating a random community

* Implement user-provided community matrix randomization functions

### BREAKING CHANGES

* Use `vegan` for community matrix randomizations instead of `picante`
b0a2d47130398eb62e28eba4783057f781763645
* [Use `vegan`](https://github.com/joelnitta/canaper/commit/b0a2d47130398eb62e28eba4783057f781763645) for community matrix randomizations instead of `picante`


### BUG FIXES

* Fix error in classification of endemism types with `cpr_classify_endem()`,
* [Fix error](https://github.com/joelnitta/canaper/commit/2f3318c1d62f401d7c99bdcc16c64194359c3fbe) in classification of endemism types with `cpr_classify_endem()`,
where super-endemic cells were previously being assigned if `pe_obs_p_upper`
**or** `pe_obs_alt_p_upper` were highly significant (P > 0.99), to requiring
**both** to be highly significant 2f3318c1d62f401d7c99bdcc16c64194359c3fbe
**both** to be highly significant

* Fix calculation of RPD, RPE where alternative tree had all branch lengths
* [Fix calculation](https://github.com/joelnitta/canaper/commit/50ed6e975d14adba334f06a984d521ff69ed961c) of RPD, RPE where alternative tree had all branch lengths
converted to same value, to converting only non-zero branch lengths to same
value 50ed6e975d14adba334f06a984d521ff69ed961c
value

canaper 0.0.0.9000
===============
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6 changes: 3 additions & 3 deletions codemeta.json
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"codeRepository": "https://github.com/joelnitta/canaper",
"issueTracker": "https://github.com/joelnitta/canaper/issues",
"license": "https://spdx.org/licenses/MIT",
"version": "0.0.1",
"version": "0.0.2",
"programmingLanguage": {
"@type": "ComputerLanguage",
"name": "R",
"url": "https://r-project.org"
},
"runtimePlatform": "R version 4.1.1 (2021-08-10)",
"runtimePlatform": "R version 4.1.2 (2021-11-01)",
"author": [
{
"@type": "Person",
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}
],
"releaseNotes": "https://github.com/joelnitta/canaper/blob/master/NEWS.md",
"fileSize": "7891.857KB",
"fileSize": "8154.89KB",
"contIntegration": ["https://github.com/joelnitta/canaper/actions", "https://codecov.io/gh/joelnitta/canaper?branch=main"],
"developmentStatus": "https://www.repostatus.org/#wip",
"keywords": [
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73 changes: 38 additions & 35 deletions inst/WORDLIST
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