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@JannesSP JannesSP released this 05 Mar 11:30
1.2.3
cdcd016

Added

  • getPolyAStandardizedSignal(self, readid : str, polyAstart : int, polyAend : int) -> np.ndarray

Standardize the read signal of the provided read with the polyA.
This function uses the median and mad to standardize the read with the polyA signal.
After standardization the polyA signal will have a mean of 108.901413 and a stdev of 2.676522.

Parameter

readid : str
polyAstart : int

  • included starting index of the polyA signal in the read

polyAend : int

  • excluded ending index of the polyA signal in the read

Returns

standardizedSignal : np.ndarray

  • polyA standardized read signal
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