Remove broken pypi distribution

rnajena · Jul 20, 2023 · db2bbb5 · db2bbb5
1 parent 7b81f9d
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diff --git a/README.md b/README.md
@@ -1,8 +1,6 @@
 # ![](figures/magnipore_logo.png)
 
-[![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-teal.svg)](https://www.gnu.org/licenses/gpl-3.0)![PyPI - Python Version](https://img.shields.io/pypi/pyversions/magnipore)![conda](https://img.shields.io/badge/Uses-conda-green.svg)
-
-[![PyPI](https://img.shields.io/pypi/v/magnipore) ![PyPI - Downloads](https://img.shields.io/pypi/dm/magnipore) ![PyPI - Status](https://img.shields.io/pypi/status/magnipore)](https://pypi.org/project/magnipore/)
+[![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-teal.svg)](https://www.gnu.org/licenses/gpl-3.0)![conda](https://img.shields.io/badge/Uses-conda-green.svg)
 
 [![Conda package](https://anaconda.org/jannessp/magnipore/badges/version.svg)](https://anaconda.org/jannessp/magnipore) ![Conda](https://img.shields.io/conda/dn/jannessp/magnipore)
 [![Conda package](https://anaconda.org/jannessp/magnipore/badges/latest_release_date.svg)](https://anaconda.org/jannessp/magnipore) [![Conda package](https://anaconda.org/jannessp/magnipore/badges/platforms.svg)](https://anaconda.org/jannessp/magnipore)
@@ -22,15 +20,8 @@ ___
 6.  [Output File Description](#output-file-description)
 7.  [Error Codes Explanation](#error-codes-explanation)
 ___
-## Installation
-
-### via pip
-
-```bash
-pip install magnipore
-```
+## Installation via Conda
 
-### via Conda
 To install Magnipore we recommend to use Conda:
 Magnipore is available for **linux-64 and osx-64**.
 

diff --git a/README.rst b/README.rst
@@ -1,15 +1,5 @@
-Installation
-============
-
-via pip
--------
-
-.. code:: bash
-
-   pip install magnipore
-
-via Conda
----------
+Installation via Conda
+======================
 
 To install Magnipore we recommend to use Conda: Magnipore is available
 for **linux-64 and osx-64**.

diff --git a/conda.recipe/meta.yaml b/conda.recipe/meta.yaml
@@ -20,32 +20,17 @@ requirements:
     - pip
   run:
     - python
-    - h5py>=3.7
-    - biopython>=1.80
-    - mafft>=7.508
-    - matplotlib>=3.6
-    - numpy>=1.21
-    - scipy>=1.9
-    - minimap2>=2.24
-    - samtools>=1.0
-    - pandas>=1.5
-    - seaborn>=0.12
-    - psutil>=5.9
-    - hdf5>=1.12
-    - hdf5plugin>=3.3
-    - ont_vbz_hdf_plugin>=1.0
-    - pytest>=7.1
-    - gzip>=1.12
-    - f5c>=1.2
-    - read5>=1.2.0
+    # dependencies are defined in setup.py
+    {% for dep in data['install_requires'] %}
+    - {{ dep.lower() }}
+    {% endfor %}
 
 test:
   source_files:
     - tests
   requires:
     - pytest
   commands:
-    - pip install pod5 --no-warn-conflicts --no-python-version-warning
     - magnipore --help
     - nanosherlock --help
     - pytest -vv
@@ -59,9 +44,7 @@ about:
   description: |
     # Magnipore
 
-    [![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-teal.svg)](https://www.gnu.org/licenses/gpl-3.0)![PyPI - Python Version](https://img.shields.io/pypi/pyversions/magnipore)![conda](https://img.shields.io/badge/Uses-conda-green.svg)
-
-    [![PyPI](https://img.shields.io/pypi/v/magnipore) ![PyPI - Downloads](https://img.shields.io/pypi/dm/magnipore) ![PyPI - Status](https://img.shields.io/pypi/status/magnipore)](https://pypi.org/project/magnipore/)
+    [![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-teal.svg)](https://www.gnu.org/licenses/gpl-3.0)![conda](https://img.shields.io/badge/Uses-conda-green.svg)
 
     [![Conda package](https://anaconda.org/jannessp/magnipore/badges/version.svg)](https://anaconda.org/jannessp/magnipore) ![Conda](https://img.shields.io/conda/dn/jannessp/magnipore)
     [![Conda package](https://anaconda.org/jannessp/magnipore/badges/latest_release_date.svg)](https://anaconda.org/jannessp/magnipore) [![Conda package](https://anaconda.org/jannessp/magnipore/badges/platforms.svg)](https://anaconda.org/jannessp/magnipore)
@@ -80,15 +63,8 @@ about:
     6.  [Output File Description](#output-file-description)
     7.  [Error Codes Explanation](#error-codes-explanation)
     ___
-    ## Installation
-
-    ### via pip
-
-    ```bash
-    pip install magnipore
-    ```
+    ## Installation via Conda
 
-    ### via Conda
     To install Magnipore we recommend to use Conda:
     Magnipore is available for **linux-64 and osx-64**.
 

diff --git a/pypi.sh b/pypi.sh
diff --git a/setup.py b/setup.py
@@ -1,7 +1,7 @@
 from setuptools import setup
 import versioneer
 
-# pypi dependencies
+# conda dependencies
 requirements = [
     'h5py>=3.7',
     'biopython>=1.80',
@@ -16,11 +16,11 @@
     'psutil>=5.9',
     'hdf5>=1.12',
     'hdf5plugin>=3.3',
-    'vbz-h5py-plugin>=1.0',
+    'ont_vbz_hdf_plugin>=1.0',
     'pytest>=7.1',
     'gzip>=1.12',
     'f5c>=1.2',
-    'read5>=1.2.0'
+    'read5>=1.2'
 ]
 
 setup(