Automated GHA update

rickhelmus · Dec 30, 2023 · d9274a7 · d9274a7
1 parent 692bb41
commit d9274a7
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Showing 35 changed files with 33 additions and 32 deletions.
diff --git a/bin/windows/contrib/4.2/DBI_1.1.3.zip b/bin/windows/contrib/4.2/DBI_1.1.3.zip
diff --git a/bin/windows/contrib/4.2/DBI_1.2.0.zip b/bin/windows/contrib/4.2/DBI_1.2.0.zip
diff --git a/bin/windows/contrib/4.2/InterpretMSSpectrum_1.3.3.zip b/bin/windows/contrib/4.2/InterpretMSSpectrum_1.3.3.zip
diff --git a/bin/windows/contrib/4.2/PACKAGES b/bin/windows/contrib/4.2/PACKAGES
@@ -413,11 +413,11 @@ Enhances: igraph
 License: GPL (>= 2)
 
 Package: DBI
-Version: 1.1.3
+Version: 1.2.0
 Depends: methods, R (>= 3.0.0)
 Suggests: blob, covr, DBItest, dbplyr, downlit, dplyr, glue, hms,
-        knitr, magrittr, RMariaDB, rmarkdown, rprojroot, RSQLite (>=
-        1.1-2), testthat, xml2
+        knitr, magrittr, nanoarrow, RMariaDB, rmarkdown, rprojroot,
+        RSQLite (>= 1.1-2), testthat (>= 3.0.0), vctrs, xml2
 License: LGPL (>= 2.1)
 
 Package: dbplyr
@@ -727,14 +727,14 @@ Depends: R (>= 2.8.0)
 License: LGPL-3
 
 Package: future.apply
-Version: 1.11.0
+Version: 1.11.1
 Depends: R (>= 3.2.0), future (>= 1.28.0)
 Imports: globals (>= 0.16.1), parallel, utils
 Suggests: datasets, stats, tools, listenv (>= 0.8.0), R.rsp, markdown
 License: GPL (>= 2)
 
 Package: future
-Version: 1.33.0
+Version: 1.33.1
 Imports: digest, globals (>= 0.16.1), listenv (>= 0.8.0), parallel,
         parallelly (>= 1.34.0), utils
 Suggests: methods, RhpcBLASctl, R.rsp, markdown
@@ -1276,7 +1276,7 @@ License: GPL (>= 2)
 Archs: x64
 
 Package: magick
-Version: 2.8.1
+Version: 2.8.2
 Imports: Rcpp (>= 0.12.12), magrittr, curl
 LinkingTo: Rcpp
 Suggests: av (>= 0.3), spelling, jsonlite, methods, knitr, rmarkdown,
@@ -1358,7 +1358,7 @@ Suggests: markdown
 License: GPL-3
 
 Package: mgcv
-Version: 1.9-0
+Version: 1.9-1
 Priority: recommended
 Depends: R (>= 3.6.0), nlme (>= 3.1-64)
 Imports: methods, stats, graphics, Matrix, splines, utils

diff --git a/bin/windows/contrib/4.2/PACKAGES.gz b/bin/windows/contrib/4.2/PACKAGES.gz
diff --git a/bin/windows/contrib/4.2/PACKAGES.rds b/bin/windows/contrib/4.2/PACKAGES.rds
diff --git a/bin/windows/contrib/4.2/cliqueMS_1.7.1.zip b/bin/windows/contrib/4.2/cliqueMS_1.7.1.zip
diff --git a/bin/windows/contrib/4.2/future.apply_1.11.0.zip b/bin/windows/contrib/4.2/future.apply_1.11.0.zip
diff --git a/bin/windows/contrib/4.2/future.apply_1.11.1.zip b/bin/windows/contrib/4.2/future.apply_1.11.1.zip
diff --git a/bin/windows/contrib/4.2/future_1.33.0.zip b/bin/windows/contrib/4.2/future_1.33.0.zip
diff --git a/bin/windows/contrib/4.2/future_1.33.1.zip b/bin/windows/contrib/4.2/future_1.33.1.zip
diff --git a/bin/windows/contrib/4.2/magick_2.8.1.zip → bin/windows/contrib/4.2/magick_2.8.2.zip b/bin/windows/contrib/4.2/magick_2.8.1.zip → bin/windows/contrib/4.2/magick_2.8.2.zip
diff --git a/bin/windows/contrib/4.2/mgcv_1.9-0.zip b/bin/windows/contrib/4.2/mgcv_1.9-0.zip
diff --git a/bin/windows/contrib/4.2/mgcv_1.9-1.zip b/bin/windows/contrib/4.2/mgcv_1.9-1.zip
diff --git a/bin/windows/contrib/4.2/patRoon_2.3.1.zip b/bin/windows/contrib/4.2/patRoon_2.3.1.zip
diff --git a/bin/windows/contrib/4.3/DBI_1.1.3.zip b/bin/windows/contrib/4.3/DBI_1.1.3.zip
diff --git a/bin/windows/contrib/4.3/DBI_1.2.0.zip b/bin/windows/contrib/4.3/DBI_1.2.0.zip
diff --git a/...ndows/contrib/4.3/GenomeInfoDb_1.38.2.zip → ...ndows/contrib/4.3/GenomeInfoDb_1.38.5.zip b/...ndows/contrib/4.3/GenomeInfoDb_1.38.2.zip → ...ndows/contrib/4.3/GenomeInfoDb_1.38.5.zip
diff --git a/bin/windows/contrib/4.3/InterpretMSSpectrum_1.3.3.zip b/bin/windows/contrib/4.3/InterpretMSSpectrum_1.3.3.zip
diff --git a/bin/windows/contrib/4.3/PACKAGES b/bin/windows/contrib/4.3/PACKAGES
@@ -427,11 +427,11 @@ Enhances: igraph
 License: GPL (>= 2)
 
 Package: DBI
-Version: 1.1.3
+Version: 1.2.0
 Depends: methods, R (>= 3.0.0)
 Suggests: blob, covr, DBItest, dbplyr, downlit, dplyr, glue, hms,
-        knitr, magrittr, RMariaDB, rmarkdown, rprojroot, RSQLite (>=
-        1.1-2), testthat, xml2
+        knitr, magrittr, nanoarrow, RMariaDB, rmarkdown, rprojroot,
+        RSQLite (>= 1.1-2), testthat (>= 3.0.0), vctrs, xml2
 License: LGPL (>= 2.1)
 
 Package: dbplyr
@@ -742,14 +742,14 @@ Depends: R (>= 2.8.0)
 License: LGPL-3
 
 Package: future.apply
-Version: 1.11.0
+Version: 1.11.1
 Depends: R (>= 3.2.0), future (>= 1.28.0)
 Imports: globals (>= 0.16.1), parallel, utils
 Suggests: datasets, stats, tools, listenv (>= 0.8.0), R.rsp, markdown
 License: GPL (>= 2)
 
 Package: future
-Version: 1.33.0
+Version: 1.33.1
 Imports: digest, globals (>= 0.16.1), listenv (>= 0.8.0), parallel,
         parallelly (>= 1.34.0), utils
 Suggests: methods, RhpcBLASctl, R.rsp, markdown
@@ -789,12 +789,13 @@ Suggests: covr, pkgload, testthat (>= 3.0.0), tibble, withr
 License: MIT + file LICENSE
 
 Package: GenomeInfoDb
-Version: 1.38.2
+Version: 1.38.5
 Depends: R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), S4Vectors (>=
         0.25.12), IRanges (>= 2.13.12)
 Imports: stats, stats4, utils, RCurl, GenomeInfoDbData
-Suggests: GenomicRanges, Rsamtools, GenomicAlignments, GenomicFeatures,
-        TxDb.Dmelanogaster.UCSC.dm3.ensGene, BSgenome,
+Suggests: R.utils, data.table, GenomicRanges, Rsamtools,
+        GenomicAlignments, GenomicFeatures, BSgenome,
+        TxDb.Dmelanogaster.UCSC.dm3.ensGene,
         BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Celegans.UCSC.ce2,
         BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocStyle, knitr
 License: Artistic-2.0
@@ -1291,7 +1292,7 @@ License: GPL (>= 2)
 Archs: x64
 
 Package: magick
-Version: 2.8.1
+Version: 2.8.2
 Imports: Rcpp (>= 0.12.12), magrittr, curl
 LinkingTo: Rcpp
 Suggests: av (>= 0.3), spelling, jsonlite, methods, knitr, rmarkdown,
@@ -1380,7 +1381,7 @@ Suggests: markdown
 License: GPL-3
 
 Package: mgcv
-Version: 1.9-0
+Version: 1.9-1
 Priority: recommended
 Depends: R (>= 3.6.0), nlme (>= 3.1-64)
 Imports: methods, stats, graphics, Matrix, splines, utils
@@ -2311,7 +2312,7 @@ License: MIT + file LICENSE
 Archs: x64
 
 Package: SparseArray
-Version: 1.2.2
+Version: 1.2.3
 Depends: R (>= 4.3.0), methods, Matrix, BiocGenerics (>= 0.43.1),
         MatrixGenerics (>= 1.11.1), S4Vectors, S4Arrays (>= 1.1.6)
 Imports: stats, matrixStats, IRanges, XVector

diff --git a/bin/windows/contrib/4.3/PACKAGES.gz b/bin/windows/contrib/4.3/PACKAGES.gz
diff --git a/bin/windows/contrib/4.3/PACKAGES.rds b/bin/windows/contrib/4.3/PACKAGES.rds
diff --git a/bin/windows/contrib/4.3/SparseArray_1.2.2.zip b/bin/windows/contrib/4.3/SparseArray_1.2.2.zip
diff --git a/bin/windows/contrib/4.3/SparseArray_1.2.3.zip b/bin/windows/contrib/4.3/SparseArray_1.2.3.zip
diff --git a/bin/windows/contrib/4.3/cliqueMS_1.7.1.zip b/bin/windows/contrib/4.3/cliqueMS_1.7.1.zip
diff --git a/bin/windows/contrib/4.3/future.apply_1.11.0.zip b/bin/windows/contrib/4.3/future.apply_1.11.0.zip
diff --git a/bin/windows/contrib/4.3/future.apply_1.11.1.zip b/bin/windows/contrib/4.3/future.apply_1.11.1.zip
diff --git a/bin/windows/contrib/4.3/future_1.33.0.zip b/bin/windows/contrib/4.3/future_1.33.0.zip
diff --git a/bin/windows/contrib/4.3/future_1.33.1.zip b/bin/windows/contrib/4.3/future_1.33.1.zip
diff --git a/bin/windows/contrib/4.3/magick_2.8.1.zip → bin/windows/contrib/4.3/magick_2.8.2.zip b/bin/windows/contrib/4.3/magick_2.8.1.zip → bin/windows/contrib/4.3/magick_2.8.2.zip
diff --git a/bin/windows/contrib/4.3/mgcv_1.9-0.zip b/bin/windows/contrib/4.3/mgcv_1.9-0.zip
diff --git a/bin/windows/contrib/4.3/mgcv_1.9-1.zip b/bin/windows/contrib/4.3/mgcv_1.9-1.zip
diff --git a/bin/windows/contrib/4.3/patRoon_2.3.1.zip b/bin/windows/contrib/4.3/patRoon_2.3.1.zip
diff --git a/patRoonDeps-4.2.tsv b/patRoonDeps-4.2.tsv
@@ -49,7 +49,7 @@ crosstalk	1.2.1
 curl	5.2.0	
 data.table	1.14.10	
 data.tree	1.1.0	
-DBI	1.1.3	
+DBI	1.2.0	
 dbplyr	2.4.0	
 dbscan	1.1-12	
 DelayedArray	0.23.2	
@@ -89,8 +89,8 @@ fst	0.9.8
 fstcore	0.9.18	
 futile.logger	1.4.3	
 futile.options	1.0.1	
-future	1.33.0	
-future.apply	1.11.0	
+future	1.33.1	
+future.apply	1.11.1	
 GA	3.2.3	
 gargle	1.5.2	
 gclus	1.3.2	
@@ -152,7 +152,7 @@ lifecycle	1.0.4
 limma	3.54.2	
 listenv	0.9.0	
 lubridate	1.9.3	
-magick	2.8.1	
+magick	2.8.2	
 magrittr	2.0.3	
 MALDIquant	1.22.1	
 MASS	7.3-60	
@@ -162,7 +162,7 @@ MatrixGenerics	1.10.0
 matrixStats	1.2.0	
 memoise	2.0.1	
 MetaClean	1.0.1	d0ce1bc0b2fe4d17e7e047c8c07c75b81c4e5833
-mgcv	1.9-0	
+mgcv	1.9-1	
 mime	0.12	
 miniUI	0.1.1.1	
 MLmetrics	1.1.1	
@@ -186,7 +186,7 @@ nontargetData	1.1	75b2a92cd549f72cc71dfe7b86bd42947d62f2c4
 numDeriv	2016.8-1.1	
 openssl	2.1.1	
 parallelly	1.36.0	
-patRoon	2.3.1	336bc1625e69b4ff6444f52d861b459ef8d10e5b
+patRoon	2.3.1	44da5141fd5bdb3565ad42720514f158ed96d939
 pcaMethods	1.90.0	
 permute	0.9-7	
 pillar	1.9.0	

diff --git a/patRoonDeps-4.3.tsv b/patRoonDeps-4.3.tsv
@@ -51,7 +51,7 @@ crosstalk	1.2.1
 curl	5.2.0	
 data.table	1.14.10	
 data.tree	1.1.0	
-DBI	1.1.3	
+DBI	1.2.0	
 dbplyr	2.4.0	
 dbscan	1.1-12	
 DelayedArray	0.28.0	
@@ -91,13 +91,13 @@ fst	0.9.8
 fstcore	0.9.18	
 futile.logger	1.4.3	
 futile.options	1.0.1	
-future	1.33.0	
-future.apply	1.11.0	
+future	1.33.1	
+future.apply	1.11.1	
 GA	3.2.3	
 gargle	1.5.2	
 gclus	1.3.2	
 generics	0.1.3	
-GenomeInfoDb	1.38.2	
+GenomeInfoDb	1.38.5	
 GenomeInfoDbData	1.2.11	f3111730888a3d83e9465ffa2552003de153bbf2
 GenomicRanges	1.54.1	
 getPass	0.2-4	
@@ -154,7 +154,7 @@ lifecycle	1.0.4
 limma	3.58.1	
 listenv	0.9.0	
 lubridate	1.9.3	
-magick	2.8.1	
+magick	2.8.2	
 magrittr	2.0.3	
 MALDIquant	1.22.1	
 MASS	7.3-60	
@@ -165,7 +165,7 @@ matrixStats	1.2.0
 memoise	2.0.1	
 MetaboCoreUtils	1.10.0	
 MetaClean	1.0.1	d0ce1bc0b2fe4d17e7e047c8c07c75b81c4e5833
-mgcv	1.9-0	
+mgcv	1.9-1	
 mime	0.12	
 miniUI	0.1.1.1	
 MLmetrics	1.1.1	
@@ -191,7 +191,7 @@ nontargetData	1.1	75b2a92cd549f72cc71dfe7b86bd42947d62f2c4
 numDeriv	2016.8-1.1	
 openssl	2.1.1	
 parallelly	1.36.0	
-patRoon	2.3.1	336bc1625e69b4ff6444f52d861b459ef8d10e5b
+patRoon	2.3.1	44da5141fd5bdb3565ad42720514f158ed96d939
 pcaMethods	1.94.0	
 permute	0.9-7	
 pillar	1.9.0	
@@ -279,7 +279,7 @@ shinyjs	2.1.0
 slam	0.1-50	
 snow	0.4-4	
 sourcetools	0.1.7-1	
-SparseArray	1.2.2	
+SparseArray	1.2.3	
 sparsesvd	0.2-2	
 Spectra	1.12.0	
 splashR	0.0.4	174fbf289a0357535f9bacda282b9a2dbb7807cc