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rdk authored Nov 12, 2024
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### Description

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### Publications

If you use P2Rank, please cite relevant papers:
If you use P2Rank, please cite relevant papers: <a href="/misc/citations.md" title="go to the BibTex citations"><img align="right" src="https://img.shields.io/badge/BibTeX-ddd"></img></a>

* [Software article](https://doi.org/10.1186/s13321-018-0285-8) about P2Rank pocket prediction tool
Krivak R, Hoksza D. ***P2Rank: machine learning based tool for rapid and accurate prediction of ligand binding sites from protein structure.*** Journal of Cheminformatics. 2018 Aug.
Krivak R, Hoksza D. ***P2Rank: machine learning based tool for rapid and accurate prediction of ligand binding sites from protein structure.*** Journal of Cheminformatics. 2018 Aug.
* [A new web-server article](https://doi.org/10.1093/nar/gkac389) about updates in the web interface [prankweb.cz](https://prankweb.cz)
Jakubec D, Skoda P, Krivak R, Novotny M, Hoksza D. ***PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures.*** Nucleic Acids Research, Volume 50, Issue W1, 5 July 2022, Pages W593–W597
Jakubec D, Skoda P, Krivak R, Novotny M, Hoksza D. ***PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures.*** Nucleic Acids Research, Volume 50, Issue W1, 5 July 2022, Pages W593–W597
* [Web-server article](https://doi.org/10.1093/nar/gkz424) introducing the web interface at [prankweb.cz](https://prankweb.cz)
Jendele L, Krivak R, Skoda P, Novotny M, Hoksza D. ***PrankWeb: a web server for ligand binding site prediction and visualization.*** Nucleic Acids Research, Volume 47, Issue W1, 02 July 2019, Pages W345-W349
* [Conference paper](https://doi.org/10.1007/978-3-319-21233-3_4) introducing P2Rank prediction algorithm
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Krivak R, Hoksza D. ***Improving protein-ligand binding site prediction accuracy by classification of inner pocket points using local features.*** Journal of Cheminformatics. 2015 Dec.



👨‍💻 Usage Examples
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