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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,28 @@ | ||
{ | ||
"version": "2.0.0", | ||
"tasks": [ | ||
{ | ||
"type": "shell", | ||
"label": "rsync to mpi", | ||
"command": [ | ||
// "rsync -avzh --exclude /ont_project/runs --exclude /ont_project/usecase_data.tar.gz --exclude /ont_project/.tox/ --exclude /ont_project/.git/ --exclude /ont_project/external/ont_nanosim --progress --delete ~/ont_project_all/ont_project mpi:/home/mmordig/ont_project_all &&", | ||
// also syncing nanosim | ||
"rsync -avzh --exclude /ont_project/runs --exclude /ont_project/usecase_data.tar.gz --exclude /ont_project/.tox/ --exclude /ont_project/.git/ --progress --delete ~/ont_project_all/ont_project mpi:/home/mmordig/ont_project_all &&", | ||
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// sync to biomed | ||
// "rsync -avzh --exclude /ont_project/runs --exclude /ont_project/usecase_data.tar.gz --exclude /ont_project/.tox/ --exclude /ont_project/.git/ --exclude /ont_project/external/ont_nanosim --progress --delete ~/ont_project_all/ont_project biomed:/cluster/home/mmordig/ont_project_all &&", | ||
// // sync figures back from biomed | ||
// "rsync -avzh --progress --include='*/' --include '**/figures/*.png' --include '**/configs/*' --include '**/pickled_figures/*.dill' --exclude '*' --delete biomed:/cluster/work/grlab/projects/mmordig/selseq_runs/ ~/ont_project_all/figures_biomed_cluster &&", | ||
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"echo Current time: $(date)" | ||
], | ||
"problemMatcher": [], | ||
// in keybindings.json | ||
// { | ||
// "key": "cmd+m cmd+p", | ||
// "command": "workbench.action.tasks.runTask", | ||
// "args": "rsync to mpi" | ||
// } | ||
} | ||
] | ||
} |
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Original file line number | Diff line number | Diff line change |
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|
@@ -70,6 +70,9 @@ readfish = [ | |
"read-until @ git+https://github.com/nanoporetech/[email protected]", | ||
"readfish @ {root:uri}/external/ont_readfish", | ||
] | ||
rawsignal = [ | ||
"pyslow5", | ||
] | ||
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[project.scripts] | ||
plot_seqsum = "simreaduntil.seqsum_tools.seqsum_plotting:main" | ||
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@@ -91,7 +94,7 @@ usecase_make_html_report = "simreaduntil.usecase_helpers.cli_usecase.make_html_r | |
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[tool.hatch.version] | ||
source = "vcs" | ||
fallback-version = "unknown_version" | ||
fallback-version = "0.0.0.7999" # dummy version to recognize it | ||
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[tool.hatch.metadata] | ||
# to install from git | ||
|
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