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Test ci. #4
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Test ci. #4
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e6fb7fa
Test ci.
mlondschien 9d725e5
Add qpdf.
mlondschien d541952
Try message=False
mlondschien c328c82
Set env variables above.
mlondschien 8c38355
global message=F, warning=F
mlondschien 42770c7
Try conda
mlondschien 5d9dce9
add environment.yml.
mlondschien a281e45
Add some dependencies.
mlondschien d1399f8
Add r-knitr to env.yaml.
mlondschien 4e87c70
install knitr manually.
mlondschien 7c5045e
Add r-covr and r-units to env.yaml.
mlondschien 95b6b35
Test R location
manuelburger 4c24a84
execute command in shell
manuelburger 01dfe59
Execute steps in shell
manuelburger 2d4a87b
Add pdflatex to environment
manuelburger 8c9b138
check pdflatex
manuelburger 82cbc06
add texlive env
manuelburger c278521
move
manuelburger f033428
don't check for pdflatex
manuelburger 2adecfc
Add texlive to env
manuelburger 18f54ff
Remove texlive action
manuelburger aefd07c
Update env
manuelburger 32b6b1b
Upd env
manuelburger 85e81d1
Add tinytex install
manuelburger 1d408b1
force tiny tex
manuelburger c0f887a
Update env and install demos
manuelburger a0c95f3
Fix typo
manuelburger 4004d1e
No need to make docs
manuelburger 6a77866
Add codetools to env
manuelburger 20a1674
Suppress manual check
manuelburger 8a39f7f
add qpdf
manuelburger 4add3c3
Merge branch 'main' of github.com:ratschlab/ricu into gh-actions
manuelburger 1068981
Add picdb data-env doclines
manuelburger c9893b9
Don't check doc size
manuelburger 59a1c26
run roxygen
manuelburger 1a09114
Add qpdf
manuelburger 7b0637a
Add env var
manuelburger f99df74
Add env var to check step
manuelburger 3a3636a
Edit
manuelburger 59a9df4
Change to r-qpdf
manuelburger 21d420f
Add qpdf
manuelburger df33709
remove force
manuelburger 2d83a62
remove env var
manuelburger ea49009
grep exclude pdf size warning
manuelburger 4e2066b
don't cache conda env
manuelburger 3a26802
Add caching back
manuelburger a1dce8d
ch sh
manuelburger 7beb4d7
Revert
manuelburger db41842
Delete coverage.yaml, pkgdown.yaml
mlondschien 68af794
Add comment to check.yaml, only run this on ubuntu.
mlondschien 7a521db
cleanup environment.yamls.
mlondschien 7f3b7bf
cleanup environment.yamls 2.
mlondschien 490c616
mimic-demo is on conda-forge.
mlondschien 7a99192
yaml -> yml.
mlondschien db791e6
r-mimic-demo -> r-mimic.demo
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,48 +1,48 @@ | ||
on: | ||
push: | ||
branches: | ||
- main | ||
pull_request: | ||
branches: | ||
- main | ||
|
||
name: pkgdown | ||
|
||
jobs: | ||
pkgdown: | ||
runs-on: ubuntu-latest | ||
env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
|
||
steps: | ||
- uses: actions/checkout@v2 | ||
|
||
- uses: r-lib/actions/setup-tinytex@v2 | ||
- run: tlmgr --version | ||
|
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- uses: r-lib/actions/setup-pandoc@v2 | ||
|
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- uses: r-lib/actions/setup-r@v2 | ||
with: | ||
use-public-rspm: true | ||
|
||
- uses: r-lib/actions/setup-r-dependencies@v2 | ||
with: | ||
extra-packages: | | ||
any::pkgdown | ||
local::. | ||
eth-mds/mimic-demo | ||
eth-mds/eicu-demo | ||
nbenn/mockthat | ||
|
||
- name: Build site | ||
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | ||
shell: Rscript {0} | ||
|
||
- name: Deploy to GitHub pages 🚀 | ||
if: github.event_name != 'pull_request' | ||
uses: JamesIves/[email protected] | ||
with: | ||
clean: false | ||
branch: gh-pages | ||
folder: docs | ||
# on: | ||
# push: | ||
# branches: | ||
# - main | ||
# pull_request: | ||
# branches: | ||
# - main | ||
|
||
# name: pkgdown | ||
|
||
# jobs: | ||
# pkgdown: | ||
# runs-on: ubuntu-latest | ||
# env: | ||
# GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
|
||
# steps: | ||
# - uses: actions/checkout@v2 | ||
|
||
# - uses: r-lib/actions/setup-tinytex@v2 | ||
# - run: tlmgr --version | ||
|
||
# - uses: r-lib/actions/setup-pandoc@v2 | ||
|
||
# - uses: r-lib/actions/setup-r@v2 | ||
# with: | ||
# use-public-rspm: true | ||
|
||
# - uses: r-lib/actions/setup-r-dependencies@v2 | ||
# with: | ||
# extra-packages: | | ||
# any::pkgdown | ||
# local::. | ||
# eth-mds/mimic-demo | ||
# eth-mds/eicu-demo | ||
# nbenn/mockthat | ||
|
||
# - name: Build site | ||
# run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | ||
# shell: Rscript {0} | ||
|
||
# - name: Deploy to GitHub pages 🚀 | ||
# if: github.event_name != 'pull_request' | ||
# uses: JamesIves/[email protected] | ||
# with: | ||
# clean: false | ||
# branch: gh-pages | ||
# folder: docs |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,39 @@ | ||
name: ricu | ||
channels: | ||
- nodefaults | ||
- conda-forge | ||
dependencies: | ||
- r-base | ||
- r-data.table | ||
- r-curl | ||
- r-assertthat | ||
- r-fst | ||
- r-readr | ||
- r-jsonlite | ||
- r-prt>=0.1.2 | ||
- r-tibble | ||
- r-backports | ||
- r-rlang | ||
- r-vctrs | ||
- r-cli>=2.1.0 | ||
- r-fansi | ||
- r-openssl | ||
# optional | ||
- r-rticles | ||
- r-forestmodel | ||
- r-ggplot2 | ||
- r-survival | ||
- r-kableExtra | ||
- r-magick | ||
- r-cowplot | ||
- r-knitr | ||
- r-pdftools | ||
- r-covr | ||
- r-units | ||
- r-tinytex | ||
- r-testthat | ||
- r-mockthat | ||
- r-pkgload | ||
- r-codetools | ||
- r-qpdf | ||
- qpdf |
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Just remove the file