Config updates:

- Fix sic bugs - Slack temp range
ratschlab · Mar 26, 2024 · f54afad · f54afad
1 parent 99529cd
commit f54afad
Show file tree

Hide file tree

Showing 3 changed files with 11 additions and 7 deletions.
diff --git a/inst/extdata/config/concept-dict/chemistry.json b/inst/extdata/config/concept-dict/chemistry.json
@@ -876,7 +876,8 @@
                     "ids": 253,
                     "table": "laboratory",
                     "sub_var": "laboratoryid",
-                    "class": "sic_itm"
+                    "class": "sic_itm",
+                    "callback": "convert_unit(identity_callback, 'ng/mL', 'µg/l')"
                 }
             ],
             "picdb": [
@@ -1133,7 +1134,8 @@
                 "ids": 341,
                 "table": "laboratory",
                 "sub_var": "laboratoryid",
-                "class": "sic_itm"
+                "class": "sic_itm",
+                "callback": "convert_unit(binary_op(`*`, 10), 'mg/L', 'mg/dl')"
               }
             ],
             "picdb": [

diff --git a/inst/extdata/config/concept-dict/hematology.json b/inst/extdata/config/concept-dict/hematology.json
@@ -699,7 +699,8 @@
                 {
                     "ids": 223,
                     "table": "laboratory",
-                    "sub_var": "LaboratoryID"
+                    "sub_var": "laboratoryid",
+                    "class": "sic_itm"
                 },
                 {
                   "ids": 302,
@@ -854,7 +855,7 @@
                   "ids": 290,
                   "table": "laboratory",
                   "sub_var": "laboratoryid",
-                  "callback": "convert_unit(binary_op(`*`, 0.16114), '%')",
+                  "callback": "convert_unit(binary_op(`*`, 1.6114), '%', 'g/dl')",
                   "class": "sic_itm"
                 }
             ],
@@ -1327,7 +1328,8 @@
                   "ids": 599,
                   "table": "laboratory",
                   "sub_var": "laboratoryid",
-                  "class": "sic_itm"
+                  "class": "sic_itm",
+                  "callback": "convert_unit(identity_callback, 'm/uL', 'T/L.')"
                 }
             ],
             "picdb": [

diff --git a/inst/extdata/config/concept-dict/vitals.json b/inst/extdata/config/concept-dict/vitals.json
@@ -476,8 +476,8 @@
             "C",
             "\u00b0C"
         ],
-        "min": 32,
-        "max": 42,
+        "min": 30,
+        "max": 44,
         "description": "temperature",
         "omopid": 4302666,
         "category": "vitals",