Add surgery vitals

ratschlab · Apr 5, 2024 · 866f52b · 866f52b
1 parent 047c099
commit 866f52b
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Showing 3 changed files with 45 additions and 2 deletions.
diff --git a/inst/extdata/config/concept-dict/output.json b/inst/extdata/config/concept-dict/output.json
@@ -157,7 +157,14 @@
                 {
                     "table": "chartevents",
                     "ids": [
-                        "1008"
+                        1008
+                    ],
+                    "sub_var": "itemid"
+                },
+                {
+                    "table": "outputevents",
+                    "ids": [
+                        1034
                     ],
                     "sub_var": "itemid"
                 }
@@ -221,6 +228,12 @@
               "class": "fun_itm",
               "callback": "combine_callbacks(fwd_concept('urine'), urine_rate)"
             }
+          ],
+          "picdb": [
+            {
+              "class": "fun_itm",
+              "callback": "combine_callbacks(fwd_concept('urine'), urine_rate)"
+            }
           ]
         }
     },

diff --git a/inst/extdata/config/concept-dict/vitals.json b/inst/extdata/config/concept-dict/vitals.json
@@ -104,6 +104,11 @@
                         1015
                     ],
                     "sub_var": "itemid"
+                },
+                {
+                    "table": "surgery_vital_signs",
+                    "ids": "SV4",
+                    "sub_var": "itemid"
                 }
             ]
         }
@@ -182,6 +187,11 @@
               }
             ],
             "picdb": [
+                {
+                    "table": "surgery_vital_signs",
+                    "ids": "SV16",
+                    "sub_var": "itemid"
+                }
             ]
         }
     },
@@ -268,6 +278,11 @@
                         1003, 1002
                     ],
                     "sub_var": "itemid"
+                },
+                {
+                    "table": "surgery_vital_signs",
+                    "ids": ["SV1", "SV2"],
+                    "sub_var": "itemid"
                 }
             ]
         }
@@ -379,6 +394,11 @@
                 }
             ],
             "picdb": [
+                {
+                    "table": "surgery_vital_signs",
+                    "ids": "SV5",
+                    "sub_var": "itemid"
+                }
             ]
         }
     },
@@ -487,6 +507,11 @@
                         1016
                     ],
                     "sub_var": "itemid"
+                },
+                {
+                    "table": "surgery_vital_signs",
+                    "ids": "SV3",
+                    "sub_var": "itemid"
                 }
             ]
         }
@@ -642,6 +667,11 @@
                         5253
                     ],
                     "sub_var": "itemid"
+                },
+                {
+                    "table": "surgery_vital_signs",
+                    "ids": ["SV14", "SV15"],
+                    "sub_var": "itemid"
                 }
             ]
         }

diff --git a/inst/extdata/config/data-sources/picdb.json b/inst/extdata/config/data-sources/picdb.json
@@ -798,7 +798,7 @@
                     "time_vars": [
                         "monitor_time"
                     ],
-                    "index_var": "oper_id",
+                    "index_var": "monitor_time",
                     "val_var": "value"
                 },
                 "num_rows": 1944187,