Test ci. #81
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| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| R-CMD-check: | |
| name: R CMD check (${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest', 'macos-latest'] # , 'windows-latest'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Conda env | |
| uses: mamba-org/provision-with-micromamba@e2b397b12d0a38069451664382b769c9456e3d6d | |
| with: | |
| cache-env: true | |
| - name: Install TinyTex | |
| shell: bash -l {0} | |
| run: | | |
| Rscript -e 'tinytex::install_tinytex(force = TRUE)' | |
| - name: Install demo datasets | |
| shell: bash -l {0} | |
| run: | | |
| Rscript -e 'install.packages(c("mimic.demo", "eicu.demo"), repos="https://eth-mds.github.io/physionet-demo")' | |
| - name: Run R CMD check | |
| shell: bash -l {0} | |
| run: | | |
| R CMD build . && R CMD check --as-cran $(ls -t . | head -n1) --no-manual | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| - name: Check for warnings | |
| shell: bash -l {0} | |
| run: | | |
| CHECK_LOG_FILE=ricu.Rcheck/00check.log | |
| CHECK_INSTALL_FILE=ricu.Rcheck/00install.out | |
| if ! [[ -f "$CHECK_LOG_FILE" ]]; then | |
| echo "Log-file not found." | |
| exit 1 | |
| fi | |
| if cat $CHECK_LOG_FILE | grep -q "ERROR"; then | |
| cat $CHECK_INSTALL_FILE | |
| cat $CHECK_LOG_FILE | |
| exit 1 | |
| fi | |
| if cat $CHECK_LOG_FILE | grep -q "WARNING"; then | |
| echo "Found warnings, treated as errors." | |
| cat $CHECK_LOG_FILE | |
| exit 1 | |
| fi |