Bug fix #5
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| name: pkgdown | |
| jobs: | |
| distribution-check: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: fedora:latest | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Configure Environment | |
| run: | | |
| sudo dnf install wget git 'dnf-command(copr)' -y | |
| dnf copr enable iucar/cran -y | |
| tee > /tmp/oneAPI.repo << EOF | |
| [oneAPI] | |
| name=Intel® oneAPI repository | |
| baseurl=https://yum.repos.intel.com/oneapi | |
| enabled=1 | |
| gpgcheck=0 | |
| repo_gpgcheck=0 | |
| gpgkey=https://yum.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| EOF | |
| sudo mv /tmp/oneAPI.repo /etc/yum.repos.d | |
| # Install the latest oneMKL (version 2024.1) | |
| sudo dnf update -y | |
| sudo dnf install pandoc ghostscript intel-oneapi-mkl R R-flexiblas flexiblas-* R-CoprManager make automake gcc rsync -y | |
| sudo dnf install R-CRAN-devtools R-CRAN-checkmate R-CRAN-RcppEigen R-CRAN-fastmatch R-CRAN-tidyverse R-CRAN-pkgdown R-CRAN-data.table R-CRAN-igraph R-CRAN-knitr R-CRAN-magrittr R-CRAN-markdown R-CRAN-testthat R-CRAN-memuse R-CRAN-pryr -y | |
| # Install other packages | |
| Rscript -e "install.packages(c('matrixStats', 'RcppProgress', 'rpca', 'BiocManager'), repo = 'https://cloud.r-project.org/')" | |
| Rscript -e "BiocManager::install('sparseMatrixStats', ask = FALSE, update = TRUE)" | |
| # Clone `diffusr` package | |
| git clone https://github.com/randef1ned/diffusr.git | |
| R CMD INSTALL diffusr | |
| - name: Build site | |
| run: | | |
| devtools::document() | |
| devtools::load_all() | |
| pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | |
| pkgdown::build_reference(topics = 'random_walk') | |
| shell: Rscript {0} | |
| - name: Deploy to GitHub pages 🚀 | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/[email protected] | |
| with: | |
| clean: false | |
| branch: gh-pages | |
| folder: docs |