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Fix creation of binary dilation structure in masking and moments tutorial #25

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Fix creation of binary dilation structure in masking and moments tutorial

Fix creation of binary dilation structure in masking and moments tutorial #25

Workflow file for this run

.github/workflows/build.yml at 1502c9a
name: Pull Request basic build checks
on:
push:
branches:
- main
- 'v*'
tags:
- '*'
pull_request:
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up python
id: setup-python
uses: actions/setup-python@v2
with:
python-version: '3.10'
cache: 'pip'
- name: Install requirements
run: |
mkdir ${GITHUB_WORKSPACE}/.casa
echo "datapath=['${GITHUB_WORKSPACE}/.casa/']; measurespath=datapath[0]; measures_auto_update=True; data_auto_update=True" > $GITHUB_WORKSPACE/config.py
export CASASITECONFIG=$GITHUB_WORKSPACE/config.py
pip install -r requirements.txt
pip install -U --pre astroquery # required to be separate; requirements.txt does not respect --pre
- name: Export notebooks
run: |
CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert SpectralCubeReprojectExample.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert SpectralCubeReprojectMaskExample_v4p1.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert casa_to_spectralcube_guide/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert masking_and_moments/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert parallel_spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DameCube.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert PVDiagramPlotting.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DiskPVExample.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
- name: Prepare public folder
id: folder
run: |
cp spectral_fitting/*.html docs
cp casa_to_spectralcube_guide/*.html docs
cp masking_and_moments/*.html docs
cp parallel_spectral_fitting/*.html docs
cp *.html docs
- name: Build with Jekyll
uses: actions/jekyll-build-pages@v1
with:
source: docs
destination: docs/_site
- name: Setup Pages
id: pages
uses: actions/configure-pages@v3
- name: Upload artifact
uses: actions/upload-pages-artifact@v2
with:
path: docs