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Switch from Python quilt3 to quiltcore-java #135

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merged 14 commits into from
Oct 5, 2023
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Fix README
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drernie committed Oct 5, 2023
commit 2525406c9ee65917ee070d5c2aac301dc178945b
9 changes: 8 additions & 1 deletion CHANGELOG.md
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## [0.7.0] 2023-10-05

- Use QuiltCore 0.1.0 instead of Python
- Officially QuiltCore 0.1.0 instead of Python

## [0.6.0] 2023-10-03

(interim release still using Python)

- Stop overwriting README.md (use README_NF_QUILT.md instead)
- improve formatting
- Smarter quilt_summarize.json
- Top level (only): md, html, pdf, csv, tsv
- multiqc sub-folder HTML

## [0.5.0] 2023-09-04

- Switch to quiltcore-java [NOTE: this pre-release does NOT check workflows]
- Do not pre-install packages (only install before write)

## [0.4.5] 2023-08-23

- fix metadata in README.md
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5 changes: 3 additions & 2 deletions README.md
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Expand Up @@ -6,14 +6,15 @@ NextFlow plugin for reading and writing Quilt packages as a FileSystem
developed by [Quilt Data](https://quiltdata.com/) that enables you read and write directly
to Quilt packages using `quilt+s3` URIs wherever your NextFlow pipeline currently use `s3` URIs.

Inspired by the original [`nf-quilt`](https://github.com/nextflow-io/nf-quilt) plugin (v0.2.0) developed by Seqera labs
Inspired by the original [`nf-quilt`](https://github.com/nextflow-io/nf-quilt) plugin (v0.2.0) developed by Seqera labs.

## I. Using the nf-quilt plugin in Production

This plugin allows your existing pipelines, without modification,
to read and write versioned Quilt packages stored on Amazon S3.

Use the following four steps to configure NextFlow Tower or your command-line environment.
Use the following three steps to configure NextFlow Tower or your command-line environment.
[Note: versions 0.7.0 and later no longer require the `quilt3` Python client.]

1. Enable the `nf-quilt` plugin

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