run integration tests in CI

quiltdata · Jan 27, 2024 · cc51b48 · cc51b48
1 parent 2c83afb
commit cc51b48
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Showing 2 changed files with 5 additions and 2 deletions.
diff --git a/.github/workflows/pkg-test.yml b/.github/workflows/pkg-test.yml
@@ -52,6 +52,9 @@ jobs:
     - name: Run Package Tests
       run: make pkg-test
 
+    - name: Run Package Tests
+      run: make path-input
+
     - name: Archive production artifacts
       uses: actions/upload-artifact@v3
       with:

diff --git a/Makefile b/Makefile
@@ -57,15 +57,15 @@ test-all: clean compile-all check #coverage
 # Create packages
 #
 
-pkg-test: compile-all
+pkg-test: compile #-all
 	echo "$(TEST_URI)"
 	$(NF_BIN) run ./main.nf -profile standard -plugins $(PROJECT) --outdir "$(TEST_URI)"
 
 pkg-fail: compile
 	echo "$(TEST_URI)"
 	$(NF_BIN) run ./fail.nf -profile standard -plugins $(PROJECT) --outdir "$(TEST_URI)"
 
-path-input: clean compile-all
+path-input: clean compile #-all
 	echo "$(TEST_URI)"
 	$(NF_BIN) run ./main.path.nf -profile standard -plugins $(PROJECT) --outdir "./results"