make path-input

quiltdata · Aug 26, 2024 · bbae1e6 · bbae1e6
1 parent 717e53d
commit bbae1e6
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Showing 3 changed files with 8 additions and 6 deletions.
diff --git a/Makefile b/Makefile
@@ -66,7 +66,9 @@ pkg-fail: compile
 	echo "$(TEST_URI)"
 	$(NF_BIN) run ./fail.nf -profile standard -plugins $(PROJECT) --outdir "$(TEST_URI)"
 
-path-input: clean compile #-all
+path-input: compile
+	mkdir -p work
+	date > work/COPY_THIS.md
 	echo "$(TEST_URI)"
 	$(NF_BIN) run $(PATH_NF) -profile standard -plugins $(PROJECT) --outdir "./results"
 

diff --git a/fail.nf b/fail.nf
@@ -3,7 +3,7 @@
 
 nextflow.enable.dsl = 2
 
-params.input = 'quilt+s3://quilt-example#package=examples/hurdat'
+params.input = 'quilt+s3://udp-spec#package=nf-quilt/source'
 params.outdir = '/var/tmp'
 
 packageFiles = Channel.fromPath(params.input)

diff --git a/main.path.nf b/main.path.nf
@@ -3,9 +3,9 @@
 
 nextflow.enable.dsl=2
 
-test_file_local = 'README.md'
-test_file_s3 = 's3://quilt-example/examples/hurdat2/README.md'
-test_file_quilt = 'quilt+s3://quilt-example#package=examples/hurdat2&path=README.md'
+test_file_local = 'work/COPY_THIS.md'
+test_file_s3 = 's3://udp-spec/nf-quilt/source/COPY_THIS.md'
+test_file_quilt = 'quilt+s3://udp-spec#package=nf-quilt/source&path=COPY_THIS.md'
 
 myFileChannel = Channel.fromList([file(test_file_local), file(test_file_s3), file(test_file_quilt)])
 
@@ -15,7 +15,7 @@ process CHECK_INPUT {
         path input
 
     output:
-        path 'README.md', emit: output
+        path 'COPY_THIS.md', emit: output
 
     script:
     """