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cleanup README
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drernie committed Oct 17, 2023
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Expand Up @@ -63,7 +63,7 @@ You can also specify these as YAML to pass to `-params-file`:

```yaml
input: "quilt+s3://quilt-example#package=examples/hurdat"
outdir: "quilt+s3://seqera-quilt#package=test/hurdat"
outdir: "quilt+s3://nf-core-gallery#package=test/hurdat"
```
Note that `--key` on the command-line corresponds to `params.key` in your script.
Expand All @@ -83,7 +83,7 @@ For Tower, you can use the "Pre-run script" to set the environment variables.

## II. Advanced URI Options

There are a number of additional paramters you can add to Quilt+ URIs,
There are a number of additional parameters you can add to Quilt+ URIs,
in order to customize the behavior of the plugin:

* Fragment Parameters:
Expand All @@ -95,7 +95,7 @@ in order to customize the behavior of the plugin:

* Query Parameters: also stored as package-level metadata
* **msg**: specify the commit message to use when saving the package
* **readme**: specify a string for the package README
* **readme**: specify a string for the package README_NF_QUILT.md file
(will substitute "${variables}"), or SKIP to not create a README
* **metadata**: specify SKIP to not push any new metadata (implicit or explicit)
* **_any other key_**: specify any other metadata key to store in the package
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