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remove Python from README
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drernie committed Oct 5, 2023
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Expand Up @@ -15,25 +15,6 @@ to read and write versioned Quilt packages stored on Amazon S3.

Use the following four steps to configure NextFlow Tower or your command-line environment.

1. Install the `quilt3` command-line tool

This is distributed as an open source Python package you can install using `pip3`,
and must be available in the PATH used by `nextflow`.

```bash
yum install python3-pip -y
yum install git -y
pip3 install quilt3
which quilt3
```

The above instructions use the 'yum' package manager,
which NextFlow Tower uses in the "Pre-run script"
when you edit the Pipeline settings from the Launchpad.

If you are running from the command-line, you may need to use your own package manager
(or just skip those lines if you already have Python and Git).

1. Enable the `nf-quilt` plugin

The usual way to enable a plugin is to add the following to your `nextflow.config` file,
Expand Down Expand Up @@ -183,13 +164,6 @@ git clone https://github.com/quiltdata/nf-quilt.git
cd ./nf-quilt
```

You also need to use Python to install the `quilt3` command-line tool used by `nf-quilt`:

```bash
pip install quilt3
which quilt3
```

### Unit Testing

You can compile run unit tests with:
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