make dyn-test

Makefile

@@ -73,6 +73,9 @@ pkg-test: compile #-all
 	echo "$(TEST_URI)"
 	$(NF_BIN) run ./main.nf -profile standard -plugins $(PROJECT) --outdir "$(TEST_URI)"
 
+dyn-test: compile #-all
+	$(NF_BIN) run ./main.dynamic.nf -profile standard -plugins $(PROJECT)
+
 s3-overlay: compile
 	$(NF_BIN) run ./main.nf --plugins $(PROJECT) --outdir "$(S3_BASE)/s3-overlay" --input "$(S3_BASE)/s3-in"  
 

main.dynamic.nf

@@ -0,0 +1,32 @@
+#!/usr/bin/env nextflow
+/* groovylint-disable CompileStatic */
+
+nextflow.enable.dsl = 2
+params.hash =  'c4e44f6932f13f626b8640d54fa235c1bfea675f1ad3b5b022a99b3aeb18c637'
+params.input = "quilt+s3://udp-spec#package=nf-quilt/source@${params.hash}"
+
+packageFiles = Channel.fromPath(params.input)
+
+process transfer {
+    publishDir(
+        path: 'quilt+s3://udp-spec#package=nf-quilt/dynamic',
+        mode: 'copy',
+    )
+    container 'ubuntu:20.04'
+
+    input:
+    path x
+
+    output:
+    path 'inputs/**'
+
+    """
+    mkdir -p data
+    cp -r $x inputs/
+    echo inputs/$x
+    """
+}
+
+workflow {
+    packageFiles | transfer | view { file -> file }
+}