file management

examples/decoding/quantum_surface.sh

@@ -15,9 +15,9 @@ pip install --no-index numpy scipy opt_einsum tqdm qecstruct more_itertools netw
 
 # Define arrays of lattice sizes, bond dimensions, error rates, and seeds
 lattice_sizes=(3 5 7 9 11)
-bond_dims=(4 8 16 32 64 128 256 512)
-seeds=(123 124 125 126 127 128 129 130 131 132) # 10 random seeds
-num_experiments=10 # Per each random seed
+bond_dims=(64 128 256)
+seeds=(123 124 125 126) # 4 random seeds
+num_experiments=25 # Per each random seed
 error_model="Bit Flip" # Error model used in the experiments
 
 error_rates=()
@@ -31,28 +31,33 @@ do
     error_rates+=($value)
 done
 
-# Create job submission scripts by iterating over combinations of the argments
+# Create job submission scripts by iterating over combinations of the arguments
 for seed in "${seeds[@]}"; do
     for lattice_size in "${lattice_sizes[@]}"; do
         for bond_dim in "${bond_dims[@]}"; do
             for error_rate in "${error_rates[@]}"; do
-                # Create a job submission script for each combination
-                cat > "submit-job-${lattice_size}-${bond_dim}-${error_rate}-${error_model}-${seed}.sh" <<EOS
+                # Sanitize the error model name by replacing spaces with underscores
+                sanitized_error_model=$(echo "${error_model}" | sed 's/ /_/g')
+                # Define job script filename
+                job_script="submit-job-${lattice_size}-${bond_dim}-${error_rate}-${sanitized_error_model}-${seed}.sh"
+                # Create the job submission script
+                cat > "$job_script" <<EOS
 #!/bin/bash
-#SBATCH --time=10:00:00                                                                                           # Time limit (hh:mm:ss)
+#SBATCH --time=24:00:00                                                                                           # Time limit (hh:mm:ss)
 #SBATCH --cpus-per-task=1                                                                                         # Number of CPU cores per task
-#SBATCH --mem=16000                                                                                               # Memory per node
-#SBATCH --job-name=decoding-quantum-surface-${lattice_size}-${bond_dim}-${error_rate}-${error_model}${seed}       # Descriptive job name
-#SBATCH --output=decoding-quantum-surface-${lattice_size}-${bond_dim}-${error_rate}-${error_model}${seed}-%j.out  # Standard output and error log
+#SBATCH --mem=32000                                                                                               # Memory per node
+#SBATCH --job-name=decoding-${lattice_size}-${bond_dim}-${error_rate}-${sanitized_error_model}-${seed}            # Descriptive job name
+#SBATCH --output=decoding-${lattice_size}-${bond_dim}-${error_rate}-${sanitized_error_model}-${seed}-%j.out       # Standard output and error log
 
 module load python/3.11.5
 source "$HOME/envs/myenv/bin/activate"
 
 # Run the Python script with the specified arguments
-python quantum_decoding.py --lattice_size ${lattice_size} --bond_dim ${bond_dim} --error_rate ${error_rate} --num_experiments ${num_experiments} --error_model ${error_model} --seed ${seed}
+python examples/decoding/quantum_surface.py --lattice_size ${lattice_size} --bond_dim ${bond_dim} --error_rate ${error_rate} --num_experiments ${num_experiments} --error_model "${error_model}" --seed ${seed}
 EOS
                 echo "Submitting the job for lattice size ${lattice_size}, bond dimension ${bond_dim}, error rate ${error_rate}, error model ${error_model}, and seed ${seed}."
                 sbatch "$job_script"
+                rm "$job_script"
             done
         done
     done