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@jmarshall jmarshall released this 24 Apr 00:36
· 32 commits to master since this release
v0.22.1
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jmarshall John Marshall
SSH Key Fingerprint: 4/WgbRKSYqo/cOSJB7rF0dirZ/U9pNG5dY4loiF8CfM Learn about vigilant mode.
36a0304

This bug fix release wraps htslib/samtools/bcftools 1.18.

Bugs fixed:

  • Preserve all header field tags defined in the SAM specification (notably TP) in AlignmentHeader.from_dict() and AlignmentHeader.to_dict() (#1237, PR #1238, thanks to @tfenne and @nh13)

  • Adjust HTSlib's Makefile so that make distclean no longer tries to rebuild the htscodecs configury (PR #1247, reported by @nsoranzo)

  • Reinstate S3 support in pre-built Linux wheels: support for this protocol was inadvertently omitted from the pre-built 0.22.0 wheels on Linux (#1249, #1277, etc varying circumstances; likely it is this that was reported by @Mathew-B-SDGS, @BenjaminSargsyan, et al)

  • Add missing AlignedSegment.is_mapped etc properties to type stubs (PR #1273, thanks to @msto)

  • Fix off-by-one NamedTupleProxy, asBed, etc array bounds check (#1279, reported by @dbolser)

  • Make pysam's klib headers compatible with C++ (reported by @martin-g)

Contributors

msto, dbolser, and 6 other contributors
Assets 2
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