fix: Correct get_reference_length type hint
#1313
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jmarshall
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Oct 17, 2024
jmarshall
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Oct 22, 2024
As each test is executed (thus verifying the actual code too), it invokes typecheck(). This runs mypy on the function that invoked it, parses the reveal_locals() output, and optionally checks that each local's hinted type is the same as its actual runtime time. This is optional because some tests require more nuanced checks; cf test_pileup_iterator_column() in which pileup()'s runtime type is a subclass of the hinted type. Add test cases for previously merged PRs #1273, #1296, and #1313. Also fix some pysam/libcbcf.pyi type hints that caused these tests to fail for unrelated reasons.
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referenceis typed as anintbut should be typed as astr.The first line of the function converts the passed reference name to the corresponding
tid.pysam/pysam/libcalignmentfile.pyx
Lines 508 to 509 in 7f83184