update docs for prioritizr org

.github/workflows/R-CMD-check-windows.yaml

@@ -79,7 +79,7 @@ jobs:
           remotes::install_deps(dependencies = TRUE)
           remotes::install_cran("rcmdcheck")
           remotes::install_cran("covr")
-          remotes::install_github("jeffreyhanson/surveyvoi")
+          remotes::install_github("prioritizr/surveyvoi")
         shell: Rscript {0}
 
       - name: Session information

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: surveyvoi
 Type: Package
-Version: 1.0.3.8
+Version: 1.0.3.9
 Title: Survey Value of Information
 Description: Decision support tool for prioritizing sites for ecological
     surveys based on their potential to improve plans for conserving
@@ -83,10 +83,10 @@ SystemRequirements:
     pkg-config (>= 0.29.2),
     autoconf (>= 2.69),
     automake (>= 1.16.5)
-URL: https://github.com/jeffreyhanson/surveyvoi
-BugReports: https://github.com/jeffreyhanson/surveyvoi/issues
+URL: https://github.com/prioritizr/surveyvoi, https://prioritizr.github.io/surveyvoi
+BugReports: https://github.com/prioritizr/surveyvoi/issues
 VignetteBuilder: knitr
-RoxygenNote: 7.1.2
+RoxygenNote: 7.2.0
 Encoding: UTF-8
 Biarch: true
 Collate:
@@ -116,3 +116,5 @@ Collate:
     'validate.R'
     'weighted_survey_scheme.R'
 Roxygen: list(markdown = TRUE)
+Remotes:
+  cran/RandomFields

Makefile

@@ -4,6 +4,9 @@ initc:
 	R --slave -e "Rcpp::compileAttributes()"
 	R --slave -e "tools::package_native_routine_registration_skeleton('.', 'src/init.c', character_only = FALSE)"
 
+conf:
+	autoconf
+
 docs: man readme vigns
 
 data:
@@ -84,4 +87,4 @@ sancheck:
 vgcheck:
 	R --slave -e "rhub::check(platform = 'ubuntu-gcc-devel', valgrind = TRUE, email = '[email protected]', show_status = FALSE)"
 
-.PHONY: initc docs data site test check checkwb build install man readme vigns site quicksite benchmark examples solarischeck wbcheck sancheck vgcheck
+.PHONY: initc docs data site test check checkwb build install man readme vigns site quicksite benchmark examples solarischeck wbcheck sancheck vgcheck conf

NEWS.md

@@ -1,3 +1,8 @@
+# surveyvoi 1.0.3.9
+
+- Update documentation for new code repository location.
+- Add remote for RandomFields package to facilitate installation.
+
 # surveyvoi 1.0.3.8
 
 - Standardize spelling (en-US).

README.Rmd

@@ -9,11 +9,11 @@ output:
 # surveyvoi: Survey Value of Information
 
 [![lifecycle](https://img.shields.io/badge/Lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html)
-[![R-CMD-check-Ubuntu](https://img.shields.io/github/workflow/status/jeffreyhanson/surveyvoi/Ubuntu/master.svg?label=Ubuntu)](https://github.com/jeffreyhanson/surveyvoi/actions)
-[![R-CMD-check-Windows](https://img.shields.io/github/workflow/status/jeffreyhanson/surveyvoi/Windows/master.svg?label=Windows)](https://github.com/jeffreyhanson/surveyvoi/actions)
-[![R-CMD-check-macOS](https://img.shields.io/github/workflow/status/jeffreyhanson/surveyvoi/macOS/master.svg?label=macOS)](https://github.com/jeffreyhanson/surveyvoi/actions)
-[![Documentation](https://img.shields.io/github/workflow/status/jeffreyhanson/surveyvoi/Documentation/master.svg?label=Documentation)](https://github.com/jeffreyhanson/surveyvoi/actions)
-[![Coverage Status](https://codecov.io/github/jeffreyhanson/surveyvoi/coverage.svg?branch=master)](https://codecov.io/github/jeffreyhanson/surveyvoi?branch=master)
+[![R-CMD-check-Ubuntu](https://img.shields.io/github/workflow/status/prioritizr/surveyvoi/Ubuntu/master.svg?label=Ubuntu)](https://github.com/prioritizr/surveyvoi/actions)
+[![R-CMD-check-Windows](https://img.shields.io/github/workflow/status/prioritizr/surveyvoi/Windows/master.svg?label=Windows)](https://github.com/prioritizr/surveyvoi/actions)
+[![R-CMD-check-macOS](https://img.shields.io/github/workflow/status/prioritizr/surveyvoi/macOS/master.svg?label=macOS)](https://github.com/prioritizr/surveyvoi/actions)
+[![Documentation](https://img.shields.io/github/workflow/status/prioritizr/surveyvoi/Documentation/master.svg?label=Documentation)](https://github.com/prioritizr/surveyvoi/actions)
+[![Coverage Status](https://codecov.io/github/prioritizr/surveyvoi/coverage.svg?branch=master)](https://codecov.io/github/prioritizr/surveyvoi?branch=master)
 [![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/surveyvoi)](https://CRAN.R-project.org/package=surveyvoi)
 
 ```{r, include = FALSE}
@@ -31,11 +31,11 @@ The _surveyvoi_ package is a decision support tool for prioritizing sites for ec
 
 ## Installation
 
-The development version can be installed from [GitHub](https://github.com/jeffreyhanson/surveyvoi) using the following code.
+The development version can be installed from [GitHub](https://github.com/prioritizr/surveyvoi) using the following code.
 
 ```{r, eval = FALSE}
 if (!require(remotes)) install.packages("remotes")
-remotes::install_github("jeffreyhanson/surveyvoi")
+remotes::install_github("prioritizr/surveyvoi")
 ```
 
 #### Windows
@@ -75,7 +75,7 @@ Please cite the _surveyvoi R_ package when using it in publications. To cite the
 ```{r, echo = FALSE, results = "asis", comment = ""}
 dev_version <- as.character(packageVersion("surveyvoi"))
 dev_year <- "2022"
-cat(paste0("> Hanson JO, Chadès I, Hudgins EJ, Bennett J (", dev_year, "). surveyvoi: Survey Value of Information. R package version ", dev_version, ". Available at https://github.com/jeffreyhanson/surveyvoi.\n"))
+cat(paste0("> Hanson JO, Chadès I, Hudgins EJ, Bennett J (", dev_year, "). surveyvoi: Survey Value of Information. R package version ", dev_version, ". Available at https://github.com/prioritizr/surveyvoi.\n"))
 ```
 
 ## Usage
@@ -208,8 +208,8 @@ ggtitle("scheme") +
 theme(legend.title = element_blank())
 ```
 
-This has just been a taster of the _surveyvoi R_ package. In addition to this functionality, it can be used to evaluate survey schemes using value of information analysis. Furthermore, it can be used to generate survey schemes using conventional approaches (e.g. sampling environmental gradients, and selecting places with highly uncertain information). For more information, see the [package vignette](http://jeffrey-hanson.com/surveyvoi/articles/surveyvoi.html).
+This has just been a taster of the _surveyvoi R_ package. In addition to this functionality, it can be used to evaluate survey schemes using value of information analysis. Furthermore, it can be used to generate survey schemes using conventional approaches (e.g. sampling environmental gradients, and selecting places with highly uncertain information). For more information, see the [package vignette](https://prioritizr.github.io/surveyvoi/articles/surveyvoi.html).
 
 ## Getting help
 
-If you have any questions about using the _surveyvoi R_ package or suggestions for improving it, please [file an issue at the package's online code repository](https://github.com/jeffreyhanson/surveyvoi/issues/new).
+If you have any questions about using the _surveyvoi R_ package or suggestions for improving it, please [file an issue at the package's online code repository](https://github.com/prioritizr/surveyvoi/issues/new).

README.md

@@ -4,12 +4,12 @@
 # surveyvoi: Survey Value of Information
 
 [![lifecycle](https://img.shields.io/badge/Lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html)
-[![R-CMD-check-Ubuntu](https://img.shields.io/github/workflow/status/jeffreyhanson/surveyvoi/Ubuntu/master.svg?label=Ubuntu)](https://github.com/jeffreyhanson/surveyvoi/actions)
-[![R-CMD-check-Windows](https://img.shields.io/github/workflow/status/jeffreyhanson/surveyvoi/Windows/master.svg?label=Windows)](https://github.com/jeffreyhanson/surveyvoi/actions)
-[![R-CMD-check-macOS](https://img.shields.io/github/workflow/status/jeffreyhanson/surveyvoi/macOS/master.svg?label=macOS)](https://github.com/jeffreyhanson/surveyvoi/actions)
-[![Documentation](https://img.shields.io/github/workflow/status/jeffreyhanson/surveyvoi/Documentation/master.svg?label=Documentation)](https://github.com/jeffreyhanson/surveyvoi/actions)
+[![R-CMD-check-Ubuntu](https://img.shields.io/github/workflow/status/prioritizr/surveyvoi/Ubuntu/master.svg?label=Ubuntu)](https://github.com/prioritizr/surveyvoi/actions)
+[![R-CMD-check-Windows](https://img.shields.io/github/workflow/status/prioritizr/surveyvoi/Windows/master.svg?label=Windows)](https://github.com/prioritizr/surveyvoi/actions)
+[![R-CMD-check-macOS](https://img.shields.io/github/workflow/status/prioritizr/surveyvoi/macOS/master.svg?label=macOS)](https://github.com/prioritizr/surveyvoi/actions)
+[![Documentation](https://img.shields.io/github/workflow/status/prioritizr/surveyvoi/Documentation/master.svg?label=Documentation)](https://github.com/prioritizr/surveyvoi/actions)
 [![Coverage
-Status](https://codecov.io/github/jeffreyhanson/surveyvoi/coverage.svg?branch=master)](https://codecov.io/github/jeffreyhanson/surveyvoi?branch=master)
+Status](https://codecov.io/github/prioritizr/surveyvoi/coverage.svg?branch=master)](https://codecov.io/github/prioritizr/surveyvoi?branch=master)
 [![CRAN\_Status\_Badge](http://www.r-pkg.org/badges/version/surveyvoi)](https://CRAN.R-project.org/package=surveyvoi)
 
 The *surveyvoi* package is a decision support tool for prioritizing
@@ -32,12 +32,12 @@ required to fit hierarchical generalized linear models.
 ## Installation
 
 The development version can be installed from
-[GitHub](https://github.com/jeffreyhanson/surveyvoi) using the following
+[GitHub](https://github.com/prioritizr/surveyvoi) using the following
 code.
 
 ``` r
 if (!require(remotes)) install.packages("remotes")
-remotes::install_github("jeffreyhanson/surveyvoi")
+remotes::install_github("prioritizr/surveyvoi")
 ```
 
 #### Windows
@@ -86,8 +86,8 @@ Please cite the *surveyvoi R* package when using it in publications. To
 cite the developmental version, please use:
 
 > Hanson JO, Chadès I, Hudgins EJ, Bennett J (2022). surveyvoi: Survey
-> Value of Information. R package version 1.0.3.8. Available at
-> <https://github.com/jeffreyhanson/surveyvoi>.
+> Value of Information. R package version 1.0.3.9. Available at
+> <https://github.com/prioritizr/surveyvoi>.
 
 ## Usage
 
@@ -343,11 +343,11 @@ value of information analysis. Furthermore, it can be used to generate
 survey schemes using conventional approaches (e.g. sampling
 environmental gradients, and selecting places with highly uncertain
 information). For more information, see the [package
-vignette](http://jeffrey-hanson.com/surveyvoi/articles/surveyvoi.html).
+vignette](https://prioritizr.github.io/surveyvoi/articles/surveyvoi.html).
 
 ## Getting help
 
 If you have any questions about using the *surveyvoi R* package or
 suggestions for improving it, please [file an issue at the package’s
 online code
-repository](https://github.com/jeffreyhanson/surveyvoi/issues/new).
+repository](https://github.com/prioritizr/surveyvoi/issues/new).

_pkgdown.yml

@@ -1,4 +1,4 @@
-url: https://jeffrey-hanson.com/surveyvoi
+url: https://github.com/prioritizr/surveyvoi
 
 authors:
   Jeffrey O Hanson:

configure

@@ -2,7 +2,7 @@
 # Guess values for system-dependent variables and create Makefiles.
 # Generated by GNU Autoconf 2.69 for surveyvoi see.DESCRIPTION.
 #
-# Report bugs to <https://github.com/jeffreyhanson/surveyvoi/issues>.
+# Report bugs to <https://github.com/prioritizr/surveyvoi/issues>.
 #
 #
 # Copyright (C) 1992-1996, 1998-2012 Free Software Foundation, Inc.
@@ -266,7 +266,7 @@ fi
     $as_echo "$0: be upgraded to zsh 4.3.4 or later."
   else
     $as_echo "$0: Please tell [email protected] and
-$0: https://github.com/jeffreyhanson/surveyvoi/issues about
+$0: https://github.com/prioritizr/surveyvoi/issues about
 $0: your system, including any error possibly output before
 $0: this message. Then install a modern shell, or manually
 $0: run the script under such a shell if you do have one."
@@ -581,7 +581,7 @@ PACKAGE_NAME='surveyvoi'
 PACKAGE_TARNAME='surveyvoi'
 PACKAGE_VERSION='see.DESCRIPTION'
 PACKAGE_STRING='surveyvoi see.DESCRIPTION'
-PACKAGE_BUGREPORT='https://github.com/jeffreyhanson/surveyvoi/issues'
+PACKAGE_BUGREPORT='https://github.com/prioritizr/surveyvoi/issues'
 PACKAGE_URL=''
 
 ac_subst_vars='LTLIBOBJS
@@ -1251,7 +1251,7 @@ if test -n "$ac_init_help"; then
    esac
   cat <<\_ACEOF
 
-Report bugs to <https://github.com/jeffreyhanson/surveyvoi/issues>.
+Report bugs to <https://github.com/prioritizr/surveyvoi/issues>.
 _ACEOF
 ac_status=$?
 fi
@@ -2532,7 +2532,7 @@ Usage: $0 [OPTION]... [TAG]...
 Configuration files:
 $config_files
 
-Report bugs to <https://github.com/jeffreyhanson/surveyvoi/issues>."
+Report bugs to <https://github.com/prioritizr/surveyvoi/issues>."
 
 _ACEOF
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1

configure.ac

@@ -1,7 +1,7 @@
 # Initialization
 ## setup configure
 AC_PREREQ([2.69])
-AC_INIT([surveyvoi], [see.DESCRIPTION], [https://github.com/jeffreyhanson/surveyvoi/issues])
+AC_INIT([surveyvoi], [see.DESCRIPTION], [https://github.com/prioritizr/surveyvoi/issues])
 
 ## set GMP variables
 GMP_NAME="gmp"

cran-comments.md

@@ -9,11 +9,11 @@ Jeff
 # Test environments
 
 * [Debian (testing), R-release](https://github.com/r-devel/rcheckserver) ([based on rcheckserver](https://statmath.wu.ac.at/AASC/debian/))
-* [Ubuntu 20.04, R-release](https://github.com/jeffreyhanson/surveyvoi/actions?query=workflow%3AUbuntu)
-* [Ubuntu 20.04, R-devel](https://github.com/jeffreyhanson/surveyvoi/actions?query=workflow%3AUbuntu)
-* [macOS 10.15, R-release](https://github.com/jeffreyhanson/surveyvoi/actions?query=workflow%3A%22Mac+OSX%22)
+* [Ubuntu 20.04, R-release](https://github.com/prioritizr/surveyvoi/actions?query=workflow%3AUbuntu)
+* [Ubuntu 20.04, R-devel](https://github.com/prioritizr/surveyvoi/actions?query=workflow%3AUbuntu)
+* [macOS 10.15, R-release](https://github.com/prioritizr/surveyvoi/actions?query=workflow%3A%22Mac+OSX%22)
 * [macOS 11.5.2 (arm64), R-release (macOS builder)](https://mac.r-project.org/macbuilder/submit.html)
-* [Windows Server 2019, R-release](https://github.com/jeffreyhanson/surveyvoi/actions?query=workflow%3AWindows)
+* [Windows Server 2019, R-release](https://github.com/prioritizr/surveyvoi/actions?query=workflow%3AWindows)
 * [Windows Server 2008 (x64), R-devel (Win-Builder)](https://win-builder.r-project.org/)
 
 # R CMD check results