Ubuntu #238
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
on: | |
schedule: | |
- cron: 0 0 * * 1 # schedule to run at midnight on Monday each week | |
push: | |
branches: | |
- main | |
- master | |
pull_request: | |
branches: | |
- main | |
- master | |
name: Ubuntu | |
jobs: | |
R-CMD-check: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {os: ubuntu-20.04, r: 'release'} | |
- {os: ubuntu-20.04, r: 'devel'} | |
env: | |
_R_REMOTES_NO_ERRORS_FROM_WARNINGS_: true | |
_R_CHECK_FORCE_SUGGESTS_: false | |
_R_CHECK_TIMINGS_: 10 | |
_R_CHECK_CRAN_INCOMING_REMOTE_: false | |
_R_CHECK_LIMIT_CORES_: true | |
OMP_THREAD_LIMIT: 2 | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
CI: true | |
steps: | |
# configure git to prevent it from automatically converting line-endings | |
# this is important to avoid WARNINGS during CRAN checks | |
# that are false-positives, see: | |
# https://msmith.de/2020/03/12/r-cmd-check-github-actions.html | |
- name: Configure git | |
run: git config --global core.autocrlf false | |
- uses: actions/checkout@v2 | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.config.r }} | |
use-public-rspm: true | |
- name: Install system dependencies | |
run: | | |
sudo apt-get install libnlopt-dev coinor-libsymphony-dev | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
cache-version: 4 | |
extra-packages: | | |
any::rcmdcheck | |
any::remotes | |
any::XML | |
any::covr | |
gurobi=?ignore | |
needs: | | |
check | |
- name: Install spatial R packages | |
run: | | |
options(repos = "https://cloud.r-project.org/") | |
install.packages("sf") | |
shell: Rscript {0} | |
- name: Session information | |
run: | | |
options(width = 100) | |
pkgs <- installed.packages()[, "Package"] | |
sessioninfo::session_info(pkgs, include_base = TRUE) | |
shell: Rscript {0} | |
- uses: r-lib/actions/check-r-package@v2 | |
with: | |
upload-snapshots: true | |
- name: Show testthat output | |
if: always() | |
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
shell: bash | |
- name: Test coverage | |
if: runner.os == 'Linux' && matrix.config.r == 'release' | |
run: | | |
cov <- covr::package_coverage( | |
quiet = FALSE, | |
clean = FALSE, | |
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") | |
) | |
covr::to_cobertura(cov) | |
shell: Rscript {0} | |
- uses: codecov/codecov-action@v4 | |
if: runner.os == 'Linux' && matrix.config.r == 'release' | |
with: | |
fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }} | |
file: ./cobertura.xml | |
plugin: noop | |
disable_search: true | |
token: ${{ secrets.CODECOV_TOKEN }} |