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* feat: create new setting for atlanta with latinos * upgrade python version in github actions
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,26 @@ | ||
| assort_mix: | ||
| assort_white: | ||
| attribute: race | ||
| agent_value: white | ||
| partner_values: | ||
| white: 0.722 | ||
| __other__: 0.278 | ||
| assort_black: | ||
| attribute: race | ||
| agent_value: black | ||
| partner_values: | ||
| black: 0.765 | ||
| __other__: 0.235 | ||
| assort_receptive: | ||
| attribute: sex_role | ||
| agent_value: receptive | ||
| partner_values: | ||
| receptive: 0.00 | ||
| __other__: 1.00 | ||
| assort_insertive: | ||
| attribute: sex_role | ||
| agent_value: insertive | ||
| partner_values: | ||
| insertive: 0.0 | ||
| __other__: 1.00 | ||
|
|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| calibration: | ||
| sex: | ||
| act: 1.0 | ||
| partner: 1.0 | ||
| test_frequency: 1.00 | ||
| haart: | ||
| coverage: 0.50 | ||
| acquisition: 0.50 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,146 @@ | ||
| demographics: | ||
| black: | ||
| ppl: 0.38235 | ||
| hiv: | ||
| transmission: 3.75 | ||
| sex_type: | ||
| MSM: | ||
| ppl: 1.0 | ||
| sex_role: | ||
| init: | ||
| versatile: 0.437 | ||
| insertive: 0.242 | ||
| receptive: 0.321 | ||
| safe_sex: | ||
| Sex: | ||
| prob: 0.688 | ||
| prep: | ||
| discontinue: 0.0 | ||
| adherence: 0.568 | ||
| cap: 0.0 | ||
| init: 0.0 | ||
| drug_type: | ||
| None: | ||
| ppl: 1.0 | ||
| num_partners: | ||
| Sex: | ||
| dist_type: poisson | ||
| vars: | ||
| 1: | ||
| value: 7.0 | ||
| value_type: float | ||
| hiv: | ||
| init: 0.434 | ||
| dx: | ||
| init: 0.655 | ||
| prob: 0.0256 | ||
| aids: | ||
| init: 0.232 | ||
| exit: | ||
| death: | ||
| base: 8.6 | ||
| hiv: 17.2 | ||
| aids: 34.4 | ||
| haart: | ||
| init: 0.625 | ||
| cap: 0.35 | ||
| adherence: | ||
| init: 0.885 | ||
| prob: 0.885 | ||
| discontinue: 0.10 | ||
| latino: | ||
| ppl: 0.14388 | ||
| hiv: | ||
| transmission: 3.75 | ||
| sex_type: | ||
| MSM: | ||
| ppl: 1.0 | ||
| sex_role: | ||
| init: | ||
| versatile: 0.437 | ||
| insertive: 0.242 | ||
| receptive: 0.321 | ||
| safe_sex: | ||
| Sex: | ||
| prob: 0.811 | ||
| prep: | ||
| discontinue: 0.048 | ||
| adherence: 0.568 | ||
| cap: 0.01210742 | ||
| init: 0.01210742 | ||
| drug_type: | ||
| None: | ||
| ppl: 1.0 | ||
| num_partners: | ||
| Sex: | ||
| dist_type: poisson | ||
| vars: | ||
| 1: | ||
| value: 2.8 | ||
| value_type: float | ||
| hiv: | ||
| init: 0.175 | ||
| dx: | ||
| init: 0.818 | ||
| prob: 0.0256 | ||
| aids: | ||
| init: 0.167 | ||
| exit: | ||
| death: | ||
| base: 8.6 | ||
| hiv: 17.2 | ||
| aids: 34.4 | ||
| haart: | ||
| init: 0.585 | ||
| cap: 0.65 | ||
| adherence: | ||
| init: 0.851 | ||
| prob: 0.851 | ||
| discontinue: 0.062 | ||
| white: | ||
| ppl: 0.47377 | ||
| sex_type: | ||
| MSM: | ||
| ppl: 1.0 | ||
| sex_role: | ||
| init: | ||
| versatile: 0.544 | ||
| insertive: 0.228 | ||
| receptive: 0.228 | ||
| safe_sex: | ||
| Sex: | ||
| prob: 0.528 | ||
| prep: | ||
| adherence: 0.911 | ||
| cap: 0.02833104 | ||
| discontinue: 0.0 | ||
| init: 0.02833104 | ||
| drug_type: | ||
| None: | ||
| ppl: 1.0 | ||
| hiv: | ||
| init: 0.132 | ||
| dx: | ||
| init: 0.818 | ||
| prob: 0.0256 | ||
| aids: | ||
| init: 0.07 | ||
| exit: | ||
| death: | ||
| base: 8.6 | ||
| hiv: 17.2 | ||
| aids: 34.4 | ||
| haart: | ||
| init: 0.585 | ||
| cap: 0.20 | ||
| adherence: | ||
| init: 0.817 | ||
| prob: 0.817 | ||
| discontinue: 0.07 | ||
| num_partners: | ||
| Sex: | ||
| dist_type: poisson | ||
| vars: | ||
| 1: | ||
| value: 7.0 | ||
| value_type: float |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,53 @@ | ||
| model: | ||
| seed: | ||
| ppl: 0 | ||
| run: 0 | ||
| num_pop: 26937 | ||
| time: | ||
| num_steps: 70 | ||
| steps_per_year: 12 | ||
| burn_steps: 0 | ||
| network: | ||
| type: scale_free | ||
|
|
||
| features: | ||
| incar: false | ||
| prep: true | ||
| high_risk: false | ||
| haart: true | ||
| exit_enter: true | ||
| static_network: false | ||
| agent_zero: false | ||
| assort_mix: true | ||
| vaccine: false | ||
| partner_tracing: false | ||
| timeline_scaling: true | ||
|
|
||
| prep: | ||
| target_model: | ||
| - Racial | ||
|
|
||
| hiv: | ||
| aids: | ||
| prob: 0.05 | ||
|
|
||
| classes: | ||
| bond_types: | ||
| Sex: | ||
| acts_allowed: | ||
| - sex | ||
| sex_types: | ||
| MSM: | ||
| gender: M | ||
| cis_trans: cis | ||
| sleeps_with: | ||
| - MSM | ||
| drug_types: | ||
| - None | ||
| races: | ||
| white: | ||
| hispanic: false | ||
| black: | ||
| hispanic: false | ||
| latino: | ||
| hispanic: false |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,3 @@ | ||
| outputs: | ||
| reports: | ||
| - basicReport |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| partnership: | ||
| duration: | ||
| Sex: | ||
| white: &partnership_duration | ||
| type: bins | ||
| bins: | ||
| 1: | ||
| prob: 0.456 | ||
| min: 1 | ||
| max: 3 | ||
| 2: | ||
| prob: 0.756 | ||
| min: 3 | ||
| max: 12 | ||
| 3: | ||
| prob: 1.0 | ||
| min: 13 | ||
| max: 24 | ||
| black: *partnership_duration | ||
| sex: | ||
| frequency: | ||
| Sex: | ||
| bins: | ||
| 1: | ||
| prob: 0.244 | ||
| min: 1 | ||
| max: 2 | ||
| 2: | ||
| prob: 0.737 | ||
| min: 3 | ||
| max: 4 | ||
| 3: | ||
| prob: 0.86 | ||
| min: 5 | ||
| max: 12 | ||
| 4: | ||
| prob: 1.0 | ||
| min: 13 | ||
| max: 20 | ||
| acquisition: | ||
| MSM: | ||
| insertive: 0.0011 | ||
| receptive: 0.0138 | ||
| versatile: 0.00745 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,3 @@ | ||
| prep: | ||
| target_model: | ||
| - Racial |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,92 @@ | ||
| timeline_scaling: | ||
| timeline: | ||
| white_1: | ||
| parameter: demographics|white|sex_type|MSM|prep|cap | ||
| start_time: 12 | ||
| stop_time: 24 | ||
| scalar: 2.397 | ||
| white_2: | ||
| parameter: demographics|white|sex_type|MSM|prep|cap | ||
| start_time: 24 | ||
| stop_time: 36 | ||
| scalar: 3.648 | ||
| white_3: | ||
| parameter: demographics|white|sex_type|MSM|prep|cap | ||
| start_time: 36 | ||
| stop_time: 48 | ||
| scalar: 4.912 | ||
| white_4: | ||
| parameter: demographics|white|sex_type|MSM|prep|cap | ||
| start_time: 48 | ||
| stop_time: 60 | ||
| scalar: 5.514 | ||
| white_5: | ||
| parameter: demographics|white|sex_type|MSM|prep|cap | ||
| start_time: 60 | ||
| stop_time: 72 | ||
| scalar: 5.802 | ||
| white_6: | ||
| parameter: demographics|white|sex_type|MSM|prep|cap | ||
| start_time: 72 | ||
| stop_time: 999 | ||
| scalar: 5.939 | ||
| black_1: | ||
| parameter: demographics|black|sex_type|MSM|prep|cap | ||
| start_time: 12 | ||
| stop_time: 24 | ||
| scalar: 2.393 | ||
| black_2: | ||
| parameter: demographics|black|sex_type|MSM|prep|cap | ||
| start_time: 24 | ||
| stop_time: 36 | ||
| scalar: 3.562 | ||
| black_3: | ||
| parameter: demographics|black|sex_type|MSM|prep|cap | ||
| start_time: 36 | ||
| stop_time: 48 | ||
| scalar: 4.755 | ||
| black_4: | ||
| parameter: demographics|black|sex_type|MSM|prep|cap | ||
| start_time: 48 | ||
| stop_time: 60 | ||
| scalar: 5.291 | ||
| black_5: | ||
| parameter: demographics|black|sex_type|MSM|prep|cap | ||
| start_time: 60 | ||
| stop_time: 72 | ||
| scalar: 5.528 | ||
| black_6: | ||
| parameter: demographics|black|sex_type|MSM|prep|cap | ||
| start_time: 72 | ||
| stop_time: 999 | ||
| scalar: 5.631 | ||
| latino_1: | ||
| parameter: demographics|latino|sex_type|MSM|prep|cap | ||
| start_time: 12 | ||
| stop_time: 24 | ||
| scalar: 2.405 | ||
| latino_2: | ||
| parameter: demographics|latino|sex_type|MSM|prep|cap | ||
| start_time: 24 | ||
| stop_time: 36 | ||
| scalar: 3.660 | ||
| latino_3: | ||
| parameter: demographics|latino|sex_type|MSM|prep|cap | ||
| start_time: 36 | ||
| stop_time: 48 | ||
| scalar: 4.957 | ||
| latino_4: | ||
| parameter: demographics|latino|sex_type|MSM|prep|cap | ||
| start_time: 48 | ||
| stop_time: 60 | ||
| scalar: 5.593 | ||
| latino_5: | ||
| parameter: demographics|latino|sex_type|MSM|prep|cap | ||
| start_time: 60 | ||
| stop_time: 72 | ||
| scalar: 5.905 | ||
| latino_6: | ||
| parameter: demographics|latino|sex_type|MSM|prep|cap | ||
| start_time: 72 | ||
| stop_time: 999 | ||
| scalar: 6.057 |