Polish dog/wolf demography from #905 #2402
Workflow file for this run
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| name: tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| tests: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-24.04, macos-latest, windows-latest] | |
| python: ["3.10", "3.12"] | |
| env: | |
| CONDA_ENV_NAME: stdpopsim | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python }} | |
| steps: | |
| - name: cancel previous runs | |
| uses: styfle/[email protected] | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: checkout | |
| uses: actions/[email protected] | |
| - name: Cache conda and dependencies | |
| id: cache | |
| uses: actions/[email protected] | |
| env: | |
| # Increase this to reset the cache if the key hasn't changed. | |
| CACHE_NUM: 0 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: ${{ runner.os }}-${{ runner.arch }}-${{ matrix.python}}-conda-${{ env.CACHE_NUM }}-${{ hashFiles('requirements/CI/*') }} | |
| - name: Install Conda | |
| uses: conda-incubator/[email protected] | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| with: | |
| activate-environment: anaconda-client-env | |
| python-version: ${{ matrix.python }} | |
| channels: conda-forge | |
| channel-priority: strict | |
| auto-update-conda: true | |
| - name: Fix windows .profile | |
| if: steps.cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest' | |
| run: | | |
| cp ~/.bash_profile ~/.profile | |
| - name: Install conda deps | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| shell: bash -l {0} #We need a login shell to get conda | |
| run: | | |
| conda install --yes --file=requirements/CI/conda.txt | |
| - name: Install pip deps | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| shell: bash -l {0} | |
| run: | | |
| pip install -r requirements/CI/requirements.txt | |
| - name: run test suite | |
| run: | | |
| source ~/.profile | |
| conda activate anaconda-client-env | |
| python -m pytest \ | |
| -n 0 \ | |
| -v \ | |
| --cov=stdpopsim \ | |
| --cov-branch \ | |
| --cov-report=term-missing \ | |
| --cov-report=xml \ | |
| tests | |
| - name: upload coverage report to codecov | |
| uses: codecov/[email protected] | |
| with: | |
| fail_ci_if_error: true | |
| env_vars: OS,PYTHON | |
| # Use upload token to avoid upload failures. | |
| # https://github.com/codecov/codecov-action/issues/837 | |
| token: 8ae76ade-9d0e-4a2d-b9ef-1180235be07f |