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CI: updated all deprecated actions (#400)
I have noticed there are a lot of outdated actions with deprecated warnings: <img width="956" alt="image" src="https://github.com/user-attachments/assets/bebf97c0-4a3c-41ba-87db-ab9b6789eb4c"> This PR updates all of GitHub actions to latest version to remove such warnings. I have also added some`TODO` to actions that have been archived by GitHub and that require an alternative action/solution. We can do that in a different PR once we identify the correct solution. - [x] Does not require a CHANGELOG entry
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