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updated CVARS
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neetusan committed Sep 14, 2023
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6 changes: 3 additions & 3 deletions .Rhistory
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plotly::layout(
height = 600,
width = 800,
xaxis = list(
range = c(xmin, xmax),
tickmode = "array",
Expand Down Expand Up @@ -510,3 +507,6 @@ div_var(3, 5)
renv::status()
renv::snapshot(exclude='cvars')
renv::restore()
renv::snapshot(exclude='cvars')
renv::snapshot(exclude='cvars')
renv::status()
112 changes: 15 additions & 97 deletions DESCRIPTION
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@@ -1,85 +1,3 @@
<<<<<<< HEAD
Package: cvars
Title: Clinical Visual Analytics for Review and Submission
Version: 0.1.0
Authors@R: c(
person("Smriti", "Anand", email = "[email protected]", role = c("aut", "cre")),
person("Jayashree", "V", role = "aut"),
person("Sukalpo", "Saha", role = "aut"),
person("Vikram", "S", role = "aut"),
person("Jagadish", "Katam", role = "aut"),
person("Arjun", "Rubalingam", role = "aut"),
person("Amol Bandu", "Gorde", role = "aut"),
person("Gomathi", "S", role = "aut"),
person("Dhivya", "Kanagaraj", role = "ctb"),
person("Neetu", "Sangari", role = "ctb"),
person("Aishwarya", "LR", role = "ctb"),
person("Manali", "Jadhav", role = "ctb"),
person("Prakasam", "R", role = "ctb")
)
Description: Development of an open-source tool and package to enable
generation of identified interactive plots for clinical review and
direct inclusion in submission for regulatory agencies. The initial
scope is to develop a package to generate interactive forest and
volcano plots for adverse event and FDA Medical Queries (FMQs)
analysis outputs for inclusion in submissions to the FDA. This work is
a collaboration among the American Statistical Association (ASA),
PHUSE, and FDA.
License: Apache License (>= 2)
URL: https://github.com/phuse-org/aesummaries/
BugReports: https://github.com/phuse-org/aesummaries/issues/
Depends:
R (>= 3.5)
Imports:
bs4Dash (>= 2.3.0),
dplyr (>= 1.1.2),
DT (>= 0.28),
epitools (>= 0.5.10.1),
flextable (>= 0.9.2),
forcats (>= 0.5.1),
ggplot2 (>= 3.4.3),
golem (>= 0.4.1),
htmltools (>= 0.5.6),
magrittr (>= 2.0.3),
officer (>= 0.6.2),
rlang (>= 1.1.1),
scales (>= 1.2.1),
shiny (>= 1.7.5),
shinyjs (>= 2.1.0),
shinyWidgets (>= 0.7.6),
stringr (>= 1.5.0),
tibble (>= 3.2.1)
Suggests:
cli,
config,
cowplot,
ftExtra,
ggstance,
glue,
haven,
knitr (>= 1.36),
lifecycle,
markdown (>= 1.1),
plotly,
plyr,
purrr,
RCurl,
rmarkdown,
shinycssloaders,
testthat (>= 3.1.0),
tidyr,
utils,
waiter,
withr
VignetteBuilder:
knitr
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
=======
Package: cvars
Title: Clinical Visual Analytics for Review and Submission
Version: 0.1.0
Expand Down Expand Up @@ -112,24 +30,24 @@ BugReports: https://github.com/phuse-org/aesummaries/issues/
Depends:
R (>= 3.5)
Imports:
dplyr (>= 1.0.7),
DT (>= 0.19),
bs4Dash (>= 2.3.0),
dplyr (>= 1.1.2),
DT (>= 0.28),
epitools (>= 0.5.10.1),
flextable (>= 0.8.6),
flextable (>= 0.9.2),
forcats (>= 0.5.1),
ggplot2 (>= 3.3.5),
golem (>= 0.3.1),
htmltools (>= 0.5.2),
ggplot2 (>= 3.4.3),
golem (>= 0.4.1),
htmltools (>= 0.5.6),
magrittr (>= 2.0.3),
officer (>= 0.6.1),
officer (>= 0.6.2),
rlang (>= 1.1.1),
scales (>= 1.1.1),
shiny (>= 1.7.1),
shinydashboard (>= 0.7.2),
shinyjs (>= 2.0.0),
shinyWidgets (>= 0.6.2),
stringr (>= 1.4.0),
tibble (>= 3.1.6)
scales (>= 1.2.1),
shiny (>= 1.7.5),
shinyjs (>= 2.1.0),
shinyWidgets (>= 0.7.6),
stringr (>= 1.5.0),
tibble (>= 3.2.1)
Suggests:
cli,
config,
Expand All @@ -150,6 +68,7 @@ Suggests:
testthat (>= 3.1.0),
tidyr,
utils,
waiter,
withr
VignetteBuilder:
knitr
Expand All @@ -159,4 +78,3 @@ Language: en-US
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
>>>>>>> 0cd101109665f2699b442aa971069068a28e65d5
40 changes: 0 additions & 40 deletions README.Rmd
Original file line number Diff line number Diff line change
@@ -1,42 +1,3 @@
<<<<<<< HEAD
---
title: "cvars"
output: md_document
date: '2023-07-26'
---

<!-- Please do not edit the README.md file as it is auto-generated. Only edit the README.Rmd file -->

# Clinical Visual Analytics for Review and Submission

<!-- badges: start -->
[![R-CMD-check](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/R-CMD-check.yaml)
[![test-coverage](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/test-coverage.yaml)
[![lint](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/lint.yaml/badge.svg)](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/lint.yaml)
[![Style](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/styler.yaml/badge.svg)](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/styler.yaml)
<!-- badges: end -->

Clinical Visual Analytics for Review and Submission

## Purpose

Development of an open-source tool and package to enable generation of identified interactive plots for clinical review and direct inclusion in submission for regulatory agencies. The initial scope is to develop a package to generate interactive forest and volcano plots for adverse event and FDA Medical Queries (FMQs) analysis outputs for inclusion in submissions to the FDA. This work is a collaboration among the American Statistical Association (ASA), PHUSE, and FDA.

### Dependencies

The latest version of the package works with the latest versions of the packages
stated in `DESCRIPTION`.

If a previous version of the package should be used, it is recommended to use
latest version of the dependencies at the point of time when the previous
version of {cvars} was released.

## Scope

* Build a toolbox of re-usable functions and utilities to create Clinical Domain tables and figures.
* Clinical Domain datasets which are used to create tables and figures should follow CDISC standards.

=======
---
title: "cvars"
output: md_document
Expand Down Expand Up @@ -74,4 +35,3 @@ version of {cvars} was released.
* Build a toolbox of re-usable functions and utilities to create Clinical Domain tables and figures.
* Clinical Domain datasets which are used to create tables and figures should follow CDISC standards.

>>>>>>> 0cd101109665f2699b442aa971069068a28e65d5
42 changes: 0 additions & 42 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,44 +1,3 @@
<<<<<<< HEAD
<!-- Please do not edit the README.md file as it is auto-generated. Only edit the README.Rmd file -->

# Clinical Visual Analytics for Review and Submission

<!-- badges: start -->

[![R-CMD-check](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/R-CMD-check.yaml)
[![test-coverage](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/test-coverage.yaml)
[![lint](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/lint.yaml/badge.svg)](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/lint.yaml)
[![Style](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/styler.yaml/badge.svg)](https://github.com/pfizer-rd/spa-r-ae-summaries/actions/workflows/styler.yaml)
<!-- badges: end -->

Clinical Visual Analytics for Review and Submission

## Purpose

Development of an open-source tool and package to enable generation of
identified interactive plots for clinical review and direct inclusion in
submission for regulatory agencies. The initial scope is to develop a
package to generate interactive forest and volcano plots for adverse
event and FDA Medical Queries (FMQs) analysis outputs for inclusion in
submissions to the FDA. This work is a collaboration among the American
Statistical Association (ASA), PHUSE, and FDA.

### Dependencies

The latest version of the package works with the latest versions of the
packages stated in `DESCRIPTION`.

If a previous version of the package should be used, it is recommended
to use latest version of the dependencies at the point of time when the
previous version of {cvars} was released.

## Scope

- Build a toolbox of re-usable functions and utilities to create
Clinical Domain tables and figures.
- Clinical Domain datasets which are used to create tables and figures
should follow CDISC standards.
=======
<!-- Please do not edit the README.md file as it is auto-generated. Only edit the README.Rmd file -->

# Clinical Visual Analytics for Review and Submission
Expand Down Expand Up @@ -78,4 +37,3 @@ previous version of {cvars} was released.
Clinical Domain tables and figures.
- Clinical Domain datasets which are used to create tables and figures
should follow CDISC standards.
>>>>>>> 0cd101109665f2699b442aa971069068a28e65d5
45 changes: 0 additions & 45 deletions man/cvars-package.Rd

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