Code

0015 derive seq#53

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ramiromagno merged 109 commits intomainpharmaverse/sdtm.oak:mainfrom 0015_derive_seqpharmaverse/sdtm.oak:0015_derive_seqCopy head branch name to clipboardMay 30, 2024

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Commits

Commits on Feb 8, 2024

• First mockup of hardcode_no_ct()

  ramiromagno

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  1c4501f

Commits on Feb 17, 2024

• Update hardcode_no_ct()

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  faef0b1

Commits on Feb 21, 2024

• Align hardcode_no_ct() code style with Ramm's expectations

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Commits on Feb 22, 2024

• Add hardcode_*() and assign_*() functions

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Commits on Mar 13, 2024

• hardcode_no_ct algorithm code changes (#45)

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Commits on Mar 14, 2024

• Add oak_id_vars()

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  0333d95

• Fix typo in recode()

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  7fd7716

• Simplify oak_id_vars() docs

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  802aacc

• Update assign_* and hardcode_* implementations

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  7fd07b4

• Introduce memoisation of ct_mappings()

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• Update of README introductory paragraph

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• Merge from main

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Commits on Mar 24, 2024

• Update hardcode_* functions' interface

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  7720c05

• Add contains_oak_id_vars() function

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  e87ca66

• Update contains_oak_id_vars() doc examples

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• Update sdtm_harcode() and dependant functions

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Commits on Mar 25, 2024

• Update assign_* and hardcore_* related functions

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• Automatic renv profile update.

  

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Commits on Mar 27, 2024

• Make ct and cl parameters mandatory for assign_ct()

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• Add functions ct importing

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• Bring hardcode*() and assign*() related assertions closer to user calling functions

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• Add lagging behind Rd for ct_example()

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• Add assert_ct()

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• Add ct assertions

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  7f9f388

• Merge branch '0040_hardcode_no_ct' of github.com:pharmaverse/sdtm.oak into 0040_hardcode_no_ct

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Commits on Apr 1, 2024

• Remove R/.gitkeep

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• Add unit tests for ct_vars()

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• Update dependencies

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  0456d55

• Export ct_vars()

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  0e1eab4

• Update assert_ct() docs

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  84a4f7d

• Clarify assign_ct()/assign_no_ct() doc

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  7cf1072

• Improve grammar in doc

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  7dff0aa

• Remove last empty line from ct example file

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  cb2f2e8

• Add documentation to sdtm_assign() and ct-related unit tests

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  454b7d8

• Update hardcode-related fns

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• Changes to meet linter issues

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• Code reformatting

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• Code reflow

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• Improve assert_cl() docs

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  dafcfef

• Update read_ct() docs

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• Automatic renv profile update.

  

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  0895764

• Automatic renv profile update.

  

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  339039e

• Add units tests for recode()

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  ab9db14

• Remove are_to_recode() function

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  52c52fa

• Add units tests for assert_ct()

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  229c0bd

• Add one more test for assert_ct()

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  c83bfdf

• Add a basic unit test for ct_mappings()

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  a362578

Commits on Apr 2, 2024

• Fill in some doc details of ct-related functions

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  934a15c

• Remove leftover doc text in assign

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  0dcf0fc

• Update website's reference

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  a44c865

• Styling update

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  efb423f

• Bump version and update NEWS

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  365fa09

• Fix a few lintr issues

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  b267610

• Merge branch '0040_hardcode_no_ct' of github.com:pharmaverse/sdtm.oak into 0040_hardcode_no_ct

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  cbd38eb

• Add examples to ct_map() doc

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  9cb23f5

• Fix typo in problems() doc

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  1bebdd8

• Fix typo

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• Initial mockup of assign_datetime()

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Commits on Apr 3, 2024

• Add .warn parameter to create_iso8601() internals

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  d9031fd

• Remove lint issues

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• Replace .data usage in tidyselect expressions

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Commits on Apr 4, 2024

• Variable renaming

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• Finish pending renaming of variables

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• Rename code-list to codelist

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  8cc8dcb

• Fix style

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  609b60e

• Fix style

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  e8beefc

• Merge branch '0040_hardcode_no_ct' into 0046_assign_datetime

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• Add assertions to assign_datetime()

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• Add merge example to assign_datetime() doc

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• Style changes

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• Style changes (.Rd)

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• Bump version and update news

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  79e79da

Commits on Apr 10, 2024

• Update ct_map() doc example

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  42d4d5a

• Make tibbles more readable in doc examples

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  66644eb

• Rename ct_cltc to ct_clst

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  bb2e0d2

• Merge branch '0040_hardcode_no_ct' into 0046_assign_datetime

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  97439f6

• Make tibble more readable in assign_datetime() doc examples

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  73fe395

Commits on May 3, 2024

• Stash changes so far

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  cc37420

Commits on May 4, 2024

• Fix bug in assign_datetime

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  b17161c

• Linting

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  3dba6d9

• Update styling

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  04254ac

Commits on May 14, 2024

• Add renv profile for R version 4.4

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  464f227

• Fix a few issues in domain_example() docs

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  429eebe

• Comment derive_seq()

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  9b447d1

• Add example with date and time to assign_datetime() docs

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  391df0a

• Avoid backslash hell (մերսի)

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  372f147

• Update ct_spec_vars() docs' examples

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  6801222

• Fix typo in assign_datetime() documentation

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  994012b

• Fix typo in ct_map() docs

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  1230e7c

• Merge branch '0046_assign_datetime' into 0015_derive_seq

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  e71132b

• Reformating of docs of derive_seq()

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  b8a2e20

• Merge branch 'main' into 0046_assign_datetime

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• Merge branch '0046_assign_datetime' into 0015_derive_seq

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Commits on May 15, 2024

• First mockup of derive_seq()

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  b7d104d

• Simplification of derive_seq() interface

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  ramiromagno

  committed
  58688df

• Bump dev version and update NEWS

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  committed
  a56d378

• Automatic renv profile update.

  

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  b99cb9d

• Update derive_seq()

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  ramiromagno

  committed
  8662fa7

• Merge branch '0015_derive_seq' of github.com:pharmaverse/sdtm.oak into 0015_derive_seq

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• Automatic renv profile update.

  

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  b42e7be

Commits on May 23, 2024

• Strip down the domain example data sets

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  297b4cb

• Remove rec_vars()

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  e79b87b

• Merge branch '0015_derive_seq' of github.com:pharmaverse/sdtm.oak into 0015_derive_seq

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  committed
  13b57cb

Commits on May 24, 2024

• Fix linting issues

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  committed
  06437a7

• Linting issues (still)

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  25828c4

• Fix code styling issues

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  d586512

Commits on May 30, 2024

• Addressing Edgar's review

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  fec01fc

• Add sbj_vars() to pkgdown reference list

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