Implementation of hardcode_no_ct(), hardcode_ct(), `assign_no_ct(…
#21
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| --- | |
| name: Deploy Docker Image | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - 'renv/profiles/**/renv.lock' | |
| workflow_dispatch: # give possibility to run it manually | |
| permissions: write-all | |
| env: | |
| REGISTRY: ghcr.io | |
| concurrency: | |
| group: deploy-docker-image-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| get_renv_list: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.matrix.outputs.renv }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 # "2" -> To retrieve the preceding commit. | |
| - name: Get changed files in renv/profiles | |
| id: changed-files | |
| uses: tj-actions/changed-files@v35 | |
| with: | |
| files: renv/profiles/**/renv.lock | |
| # TODO: what to do with renv_legacy ? | |
| - name: Get Updated renv # note: for case schedules job, we update every docker images, and for renv.lock files updates we only update modified renv.lock versions | |
| id: matrix | |
| run: | | |
| if [[ "${{github.event_name}}" == "schedule" || "${{github.event_name}}" == "workflow_dispatch" ]] | |
| then | |
| renv_list=$(find renv/profiles | grep renv.lock ) | |
| else | |
| renv_list="${{ steps.changed-files.outputs.all_changed_files }}" | |
| fi | |
| renv_list=$(echo $renv_list | sed 's/ /", "/g') | |
| echo "renv=[\"$renv_list\"]" >> $GITHUB_OUTPUT | |
| deploy-image: | |
| needs: [ get_renv_list ] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false # if one of the job "deploy-image" fails, the other parallel jobs will just continue | |
| matrix: | |
| value: ${{ fromJson(needs.get_renv_list.outputs.matrix) }} | |
| # Token permissions | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Print message | |
| run: | | |
| echo "updating docker image for renv ${{ matrix.value }}" | |
| - name: Set image specs | |
| id: image_specs | |
| run: | | |
| package_name=$(grep "Package:" DESCRIPTION | awk '{print $NF}') | |
| r_version=$(basename $(dirname ${{ matrix.value }})) # TODO: check here if legacy renv (if yes, delete _legacy suffix and add _legacy suffix to docker im?) | |
| echo "r_version=$r_version" >> $GITHUB_OUTPUT | |
| echo "image_name=$package_name-$r_version" >> $GITHUB_OUTPUT | |
| renv=$(echo "${{ matrix.value }}" | tr -d '"') | |
| echo "renv_lock_path=$renv" >> $GITHUB_OUTPUT | |
| if [ "$r_version" = "4.3" ]; then | |
| echo "platforms=linux/amd64,linux/arm64" >> $GITHUB_OUTPUT | |
| else | |
| echo "platforms=linux/amd64" >> $GITHUB_OUTPUT | |
| fi | |
| - name: Call deploy docker image action for every renv | |
| uses: insightsengineering/r-image-creator@v1 | |
| with: | |
| image-name: "${{ steps.image_specs.outputs.image_name }}" | |
| tag-latest: true | |
| base-image: "rocker/rstudio:${{ steps.image_specs.outputs.r_version }}" | |
| sysdeps: qpdf,libxt-dev,curl,npm,libicu-dev,libcurl4-openssl-dev,libssl-dev,make,zlib1g-dev,libfontconfig1-dev,libfreetype6-dev,libfribidi-dev,libharfbuzz-dev,libjpeg-dev,libpng-dev,libtiff-dev,pandoc,libxml2-dev,libgit2-dev,libgit2-dev,jq | |
| renv-lock-file: "${{ steps.image_specs.outputs.renv_lock_path }}" | |
| repository-owner: ${{ github.repository_owner }} | |
| repo-user: ${{ github.actor }} | |
| repo-token: "${{ secrets.GITHUB_TOKEN }}" | |
| platforms: "${{ steps.image_specs.outputs.platforms }}" | |
| # note: in case of 403 error when pushing to ghcr : link current repo to the given package registry - https://github.com/docker/build-push-action/issues/687 | |
| # (got to https://github.com/<user name>?tab=packages to go to packages settings) and there https://github.com/users/<user name>/packages/container/admiralci-4.0/settings |