Merge pull request #242 from pharmaverse/pre-release

Pre release

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: admiraldev
 Type: Package
-Title: Development Tools for the Admiral Package Family
-Version: 0.2.0
+Title: Utility Functions and Development Tools for the Admiral Package Family
+Version: 0.3.0
 Authors@R: c(
     person("Ben", "Straub", email = "[email protected]", role = c("aut", "cre")),
     person("Stefan", "Bundfuss", role = "aut"),
@@ -46,7 +46,7 @@ Suggests:
     diffdf,
     lintr,
     pkgdown,
-    testthat,
+    testthat (>= 3.0.0),
     knitr,
     methods,
     miniUI,
@@ -58,5 +58,7 @@ Suggests:
     tibble,
     usethis,
     covr,
-    DT
+    DT,
+    htmltools
 VignetteBuilder: knitr
+Config/testthat/edition: 3

NAMESPACE

@@ -5,7 +5,6 @@ export("%or%")
 export(add_suffix_to_vars)
 export(anti_join)
 export(arg_name)
-export(as_name)
 export(assert_atomic_vector)
 export(assert_character_scalar)
 export(assert_character_vector)
@@ -39,6 +38,7 @@ export(dataset_vignette)
 export(dquote)
 export(enumerate)
 export(expect_dfs_equal)
+export(expr_c)
 export(extract_vars)
 export(filter_if)
 export(get_constant_vars)
@@ -52,9 +52,11 @@ export(is_named)
 export(is_order_vars)
 export(is_valid_dtc)
 export(left_join)
+export(process_set_values_to)
 export(quo_c)
 export(quo_not_missing)
 export(remove_tmp_vars)
+export(replace_symbol_in_expr)
 export(replace_symbol_in_quo)
 export(replace_values_by_names)
 export(squote)
@@ -66,6 +68,7 @@ export(warn_if_inconsistent_list)
 export(warn_if_invalid_dtc)
 export(warn_if_vars_exist)
 export(what_is_it)
+importFrom(dplyr,across)
 importFrom(dplyr,arrange)
 importFrom(dplyr,bind_cols)
 importFrom(dplyr,bind_rows)
@@ -79,25 +82,20 @@ importFrom(dplyr,full_join)
 importFrom(dplyr,group_by)
 importFrom(dplyr,if_else)
 importFrom(dplyr,mutate)
-importFrom(dplyr,mutate_at)
-importFrom(dplyr,mutate_if)
 importFrom(dplyr,n)
 importFrom(dplyr,n_distinct)
 importFrom(dplyr,na_if)
 importFrom(dplyr,pull)
 importFrom(dplyr,rename)
-importFrom(dplyr,rename_at)
 importFrom(dplyr,row_number)
 importFrom(dplyr,select)
 importFrom(dplyr,slice)
 importFrom(dplyr,starts_with)
 importFrom(dplyr,summarise)
-importFrom(dplyr,summarise_at)
 importFrom(dplyr,tibble)
 importFrom(dplyr,transmute)
 importFrom(dplyr,ungroup)
 importFrom(dplyr,union)
-importFrom(dplyr,vars)
 importFrom(hms,as_hms)
 importFrom(lifecycle,deprecate_stop)
 importFrom(lifecycle,deprecate_warn)
@@ -139,6 +137,7 @@ importFrom(rlang,abort)
 importFrom(rlang,arg_match)
 importFrom(rlang,as_function)
 importFrom(rlang,as_label)
+importFrom(rlang,as_name)
 importFrom(rlang,as_string)
 importFrom(rlang,call2)
 importFrom(rlang,call_name)
@@ -151,33 +150,28 @@ importFrom(rlang,eval_tidy)
 importFrom(rlang,expr)
 importFrom(rlang,expr_interp)
 importFrom(rlang,expr_label)
+importFrom(rlang,exprs)
 importFrom(rlang,f_lhs)
 importFrom(rlang,f_rhs)
 importFrom(rlang,inform)
 importFrom(rlang,is_bare_formula)
 importFrom(rlang,is_call)
 importFrom(rlang,is_character)
+importFrom(rlang,is_expression)
 importFrom(rlang,is_formula)
 importFrom(rlang,is_integerish)
 importFrom(rlang,is_logical)
+importFrom(rlang,is_missing)
 importFrom(rlang,is_quosure)
-importFrom(rlang,is_quosures)
 importFrom(rlang,is_symbol)
+importFrom(rlang,is_symbolic)
 importFrom(rlang,missing_arg)
 importFrom(rlang,new_formula)
 importFrom(rlang,parse_expr)
 importFrom(rlang,parse_exprs)
 importFrom(rlang,quo)
-importFrom(rlang,quo_get_env)
-importFrom(rlang,quo_get_expr)
-importFrom(rlang,quo_is_call)
 importFrom(rlang,quo_is_missing)
 importFrom(rlang,quo_is_null)
-importFrom(rlang,quo_is_symbol)
-importFrom(rlang,quo_set_env)
-importFrom(rlang,quo_squash)
-importFrom(rlang,quo_text)
-importFrom(rlang,quos)
 importFrom(rlang,set_names)
 importFrom(rlang,sym)
 importFrom(rlang,syms)

NEWS.md

@@ -1,3 +1,44 @@
+# admiraldev 0.3.0
+
+## New Features
+  - New function `process_set_values_to()` for creating the variables specified
+  by the `set_value_to` argument and catching errors (#70)
+
+## Updates of Existing Functions
+  - Using testthat3e (testthat 3rd edition) for unit testing. This is stricter 
+  in that messages must be addressed and deprecated functions throw errors. 
+  (#230)
+  - Slight boost to test coverage for `dev_utilities` (#102)
+  - Fix datatable styling for documentation (#197)
+  - The `assert_character_vector()` function gained a `named` argument to check
+  that all elements of the vector are named. (#70)
+  - The `assert_list_of()` function gained a `named` argument to check that all
+  elements of the list are named. (#203)
+  - The `quote_fun` argument of `enumerate()` was extended such that `NULL` can
+  be specified to request no quoting of the elements. (#203)
+  - The `assert_list_of()` function was enhanced such that it also considers the
+  type of the element, e.g., to check if a value is a list of symbols. (#208)
+
+## Breaking Changes
+- The default value of the `optional` argument in `assert_date_vector()`,
+`assert_list_of()`, and `assert_s3_class()` was changed from `TRUE` to `FALSE`
+to make the default behavior consistent. (#87)
+- admiral functions no longer expect list of quosures created by `vars()` but
+list of expressions created by `exprs()`. Thus the following functions and
+arguments were deprecated:
+    - `quo_c()` and `replace_symbol_in_quo()`
+    - the `quosures` argument in `get_source_vars()`,
+    `replace_values_by_names()`, and `vars2chr()`
+
+## Documentation
+  - New section in programming strategy regarding comments (#71)
+  - Removed requirement to add `@author` tags to code scripts from programming 
+  strategy, as we will only be tracking authors in the DESCRIPTION file. Authors
+  have been removed from function documentation in line with this update. 
+  (#206, #210)
+  - Removed On-boarding Issue Template (#225)
+  - Increased clarity for the scope of the package (#232)
+
 # admiraldev 0.2.0
 
 ## New Features
@@ -22,7 +63,7 @@
   - New vignette for our package release strategy (#79) 
   - Updated multiple roxygen headers (#116, #133, #134, #141, #145, #172)
   - Description on how admiral options work for certain function inputs, i.e `subject_keys` (#133)
-  
+
 ## Various
   - PR Checklist Template updated (#172)
   - New authors/contributors (#158)

R/admiraldev-package.R

@@ -1,17 +1,16 @@
 #' @keywords internal
-#' @importFrom dplyr arrange bind_rows case_when desc ends_with filter full_join group_by
-#'             if_else mutate mutate_at mutate_if n pull rename rename_at row_number select slice
-#'             starts_with transmute ungroup vars n_distinct union distinct
-#'             summarise_at summarise coalesce bind_cols na_if tibble
+#' @importFrom dplyr across arrange bind_rows case_when desc ends_with filter
+#'   full_join group_by if_else mutate n pull rename row_number select slice
+#'   starts_with transmute ungroup n_distinct union distinct summarise coalesce
+#'   bind_cols na_if tibble
 #' @importFrom magrittr %>%
-#' @importFrom rlang := abort arg_match as_function as_label as_string call2 caller_env
-#'             call_name current_env .data enexpr enquo eval_bare eval_tidy expr
-#'             expr_interp expr_label f_lhs f_rhs inform missing_arg
-#'             is_bare_formula is_call is_character is_formula is_integerish
-#'             is_logical is_quosure is_quosures is_symbol new_formula
-#'             parse_expr parse_exprs quo quo_get_expr quo_is_call
-#'             quo_is_missing quo_is_null quo_is_symbol quos quo_squash quo_text
-#'             set_names sym syms type_of warn quo_set_env quo_get_env
+#' @importFrom rlang := abort arg_match as_function as_label as_name as_string
+#'   call2 caller_env call_name current_env .data enexpr enquo eval_bare
+#'   eval_tidy expr expr_interp expr_label exprs f_lhs f_rhs inform missing_arg
+#'   is_bare_formula is_call is_character is_expression is_formula is_integerish
+#'   is_logical is_missing is_quosure is_symbol is_symbolic new_formula
+#'   parse_expr parse_exprs quo quo_is_missing quo_is_null set_names sym syms
+#'   type_of warn
 #' @importFrom utils capture.output str
 #' @importFrom purrr map map2 map_chr map_lgl reduce walk keep map_if transpose
 #'             flatten every modify_at modify_if reduce compose