Replace admiral.test with pharmaversesdtm (#142)

* Replace admiral.test with pharmaversesdtm * Automatic renv profile update. * Automatic renv profile update. * Automatic renv profile update. * Propagation trigger --------- Co-authored-by: galachad <[email protected]>
pharmaverse · Sep 21, 2023 · ed6b6e9 · ed6b6e9
1 parent f0ec1bb
commit ed6b6e9
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Showing 7 changed files with 14 additions and 11 deletions.
diff --git a/.Rprofile b/.Rprofile
@@ -19,7 +19,7 @@
       ))
     )
   )
-  packages[!(packages %in% c("admiral", "admiraldev", "admiralci", "admiral.test", getwd()))]
+  packages[!(packages %in% c("admiral", "admiraldev", "admiralci", "admiral.test", "pharmaversesdtm", getwd()))]
 }
 
 options(renv.snapshot.filter = .get_dependencies)

diff --git a/.github/workflows/propagate.yml b/.github/workflows/propagate.yml
@@ -77,7 +77,7 @@ jobs:
               cicdguy
               bms63
               bundfussr
-          - name: admiral.test
+          - name: pharmaversesdtm
             target-branch: devel
             reviewers: |-
               bms63

diff --git a/.github/workflows/r-renv-lock.yml b/.github/workflows/r-renv-lock.yml
@@ -99,7 +99,7 @@ jobs:
                 ))
               )
             )
-            packages[!(packages %in% c("admiral", "admiraldev", "admiralci", "admiral.test", getwd()))]
+            packages[!(packages %in% c("admiral", "admiraldev", "admiralci", "admiral.test", "pharmaversesdtm", getwd()))]
           }
 
           options(renv.snapshot.filter = .get_dependencies)
@@ -108,7 +108,7 @@ jobs:
             loc_path <- find.package("admiraldev", lib.loc = .libPaths(), quiet = TRUE)
             suggests <-
               renv:::renv_dependencies_discover_description(loc_path, fields = "Suggests")[["Package"]]
-            suggests <- suggests[!(suggests %in% c("admiral", "admiraldev", "admiralci", "admiral.test"))]
+            suggests <- suggests[!(suggests %in% c("admiral", "admiraldev", "admiralci", "admiral.test", "pharmaversesdtm"))]
             renv::install(suggests, repos = options("repos"))
           }
 
@@ -126,12 +126,12 @@ jobs:
           renv::install("openpharma/staged.dependencies", repos = options("repos"))
 
           # Packages from stage dependencies to ignore
-          renv::settings$ignored.packages(c("admiral", "admiraldev", "admiral.test", "admiralci"))
+          renv::settings$ignored.packages(c("admiral", "admiraldev", "admiral.test", "admiralci", "pharmaversesdtm"))
 
-          renv::install("pharmaverse/admiral.test@devel", repos = options("repos"))
+          renv::install("pharmaverse/pharmaversesdtm@devel", repos = options("repos"))
           renv::install("pharmaverse/admiraldev@devel", repos = options("repos"))
           renv_install_suggests("admiraldev")
-          renv_install_suggests("admiral.test")
+          renv_install_suggests("pharmaversesdtm")
 
           # Install dependencies
           renv::settings$snapshot.type("explicit")

diff --git a/renv/profiles/4.1/renv/settings.json b/renv/profiles/4.1/renv/settings.json
@@ -5,7 +5,8 @@
     "admiral",
     "admiraldev",
     "admiral.test",
-    "admiralci"
+    "admiralci",
+    "pharmaversesdtm"
   ],
   "package.dependency.fields": [
     "Imports",

diff --git a/renv/profiles/4.2/renv/settings.json b/renv/profiles/4.2/renv/settings.json
@@ -5,7 +5,8 @@
     "admiral",
     "admiraldev",
     "admiral.test",
-    "admiralci"
+    "admiralci",
+    "pharmaversesdtm"
   ],
   "package.dependency.fields": [
     "Imports",

diff --git a/renv/profiles/4.3/renv/settings.json b/renv/profiles/4.3/renv/settings.json
@@ -5,7 +5,8 @@
     "admiral",
     "admiraldev",
     "admiral.test",
-    "admiralci"
+    "admiralci",
+    "pharmaversesdtm"
   ],
   "package.dependency.fields": [
     "Imports",

diff --git a/vignettes/lock_and_prop.Rmd b/vignettes/lock_and_prop.Rmd
@@ -46,7 +46,7 @@ The first step for requesting an update for a R package in the `renv.lock` file
 
 ## Propagation Process
 
-Through GitHub Actions we have developed the ability to **propagate** updated lock files with our preferred versions of R and R packages throughout the family of admiral packages.  This ensures that developers working on `{admiral.test}` and `{admiralonco}` have the same common environment as those working on `{admiraldev}` and `{admiralvaccines}`. 
+Through GitHub Actions we have developed the ability to **propagate** updated lock files with our preferred versions of R and R packages throughout the family of admiral packages.  This ensures that developers working on `{pharmaversesdtm}` and `{admiralonco}` have the same common environment as those working on `{admiraldev}` and `{admiralvaccines}`. 
 
 
 The file that does the propagation process is called [`propagate.yml`](https://github.com/pharmaverse/admiralci/blob/main/.github/workflows/propagate.yml) located in the `.github/workflows` folder of the [admiralci repository](https://github.com/pharmaverse/admiralci/).
-Original file line number
+Diff line change
@@ Expand Up / @@ -19,7 +19,7 @@ @@
           ))
         )
       )
-      packages[!(packages %in% c("admiral", "admiraldev", "admiralci", "admiral.test", getwd()))]
+      packages[!(packages %in% c("admiral", "admiraldev", "admiralci", "admiral.test", "pharmaversesdtm", getwd()))]
     }
     options(renv.snapshot.filter = .get_dependencies)
@@ Expand Down @@