Workflow file for this run
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| name: R Package Validation report | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| r-version: | |
| description: 'The version of R to use' | |
| default: '4.1' | |
| required: false | |
| type: choice | |
| options: | |
| - '4.1' | |
| - '4.2' | |
| - '4.3' | |
| workflow_call: | |
| inputs: | |
| r-version: | |
| description: 'The version of R to use' | |
| default: '4.1' | |
| required: false | |
| type: string | |
| release: | |
| types: [published] | |
| jobs: | |
| r-pkg-validation: | |
| name: Generate | |
| runs-on: ubuntu-latest | |
| container: | |
| image: "ghcr.io/pharmaverse/admiralci-${{ inputs.r-version }}:latest" | |
| # Set Github token permissions | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_REPOS: 'https://packagemanager.posit.co/cran/2021-03-31/' | |
| permissions: | |
| contents: write | |
| packages: write | |
| deployments: write | |
| steps: | |
| ##################### BEGIN boilerplate steps ##################### | |
| - name: Get branch names | |
| id: branch-name | |
| uses: tj-actions/[email protected] | |
| - name: Checkout repo (PR) 🛎 | |
| uses: actions/checkout@v3 | |
| if: github.event_name == 'pull_request' | |
| with: | |
| ref: ${{ steps.branch-name.outputs.head_ref_branch }} | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| if: github.event_name != 'pull_request' | |
| with: | |
| ref: ${{ steps.branch-name.outputs.head_ref_branch }} | |
| - name: Normalize inputs | |
| id: normalizer | |
| run: | | |
| R_VERSION="${{ inputs.r-version }}" | |
| if [ "$R_VERSION" == "" ] | |
| then { | |
| R_VERSION="4.1" | |
| } | |
| fi | |
| echo "R_VERSION=$R_VERSION" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: Restore cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| ~/.staged.dependencies | |
| key: staged-deps | |
| - name: Run Staged dependencies | |
| uses: insightsengineering/[email protected] | |
| with: | |
| run-system-dependencies: false | |
| renv-restore: false | |
| enable-check: false | |
| cran-repos: "RSPM=${{ env.R_REPOS }}" | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| ##################### END boilerplate steps ##################### | |
| - name: Build report | |
| uses: insightsengineering/[email protected] | |
| id: validation | |
| with: | |
| disable_install_dev_deps: true | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload report to release | |
| if: success() | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| file: ${{ steps.validation.outputs.report_output_filename }} | |
| asset_name: ${{ steps.validation.outputs.report_output_filename }} | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ github.ref }} | |
| overwrite: false |