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Add security assessment via {oysteR}#272

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borgmaan wants to merge 38 commits intomasterpharmaR/riskmetric:masterfrom dev/securitypharmaR/riskmetric:dev/securityCopy head branch name to clipboard

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Commits

Commits on Feb 2, 2023

• initial scaffold of oysteR integration

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Commits on Feb 3, 2023

• update pkg_ref_cache_security to just follow simple default

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• extend scan to include dependencies

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• update docs

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• clean up r cmd check warnings

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• initial approach for excluding assessments with Suggests deps in all_assessments

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• flip score to match others

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• update docs

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• typo

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• manually write docs to avoid issues with roxygen_assess_family

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Commits on Feb 21, 2023

• logic to check oysteR version

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• only assess specific package security. not dependencies.

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• mechanism to auto-include assessment if Suggests package is installed

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Commits on Feb 22, 2023

• add package-level option to muffle install prompts

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Commits on Mar 28, 2023

• validate oyster install at the ref cache layer as well

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• explicitly cast package version for oysteR input

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Commits on Apr 6, 2023

• generalize install checks; begin API tests for suggests

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• clean up generalized install helpers

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• attribute and option tests

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• file move

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• clean up tests

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• fix messaging on install helpers

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Commits on May 4, 2023

• update suggests assessment tests

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• scaffold other tests

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• add mock for oysteR

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Commits on Jun 12, 2023

• notes

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Commits on Jun 14, 2023

• Merge branch 'master' into dev/security

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• test cases for assess_security

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• Merge branch 'dev/security' of github.com:pharmaR/riskmetric into dev/security

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• fixtest assess

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• make sure security is available

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• match length

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• more missed security assessments in tes

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• re-build docs

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• imports to suppress warnings

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• try to fix dowarnings on rcmdcheck

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• resolve test errors specific to covr::code_coverage

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• update DESCRIPTION

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