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Remove ipynbs from extdata
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stolarczyk committed Sep 12, 2018
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18 changes: 3 additions & 15 deletions inst/extdata/example_peps-master/README.md
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Expand Up @@ -9,29 +9,17 @@ Your basic python workflow uses the [peppy](http://github.com/pepkit/peppy) pack

```{python}
import peppy
proj1 = peppy.Project("example1/project_config.yaml")
proj1 = peppy.Project("example_basic/project_config.yaml")
```

These Jupyter notebooks show you how to explore these examples interactively in python. You can view the rendered notebooks right here:

* [Basic peppy tutorial](tutorial.ipynb) - use `peppy` to load up a minimal example PEP.
* [Sample subannotation](subannotation.ipynb) - how to use subannotations.

If you want to run them interactively with `jupyter`, just start it on the command line like this:

```
jupyter notebook subannotation.ipynb
```


More detailed Python vignettes are available as part of the [documentation for the peppy package](https://peppy.readthedocs.io/en/latest/index.html).

## R

Your basic `R` workflow uses the [pepr](http://github.com/pepkit/pepr) package and starts like this:

```{r}
library('pepr')
p = pepr::Project("example1/project_config.yaml")
p = pepr::Project("example_basic/project_config.yaml")
```

More detailed R vignettes are available as part of the [documentation for the pepr package](http://code.databio.org/pepr).
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