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khoroshevskyi committed Sep 11, 2024
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[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/geofetch/README.html)


**geofetch** is a command-line tool that downloads sequencing data and metadata from GEO and SRA and create metadata tables in [standard PEP format](https://pep.databio.org/). `geofetch` is hosted at [pypi](https://pypi.org/project/geofetch/). You can convert the result of geofetch into unmapped `bam` or `fastq` files with the included `sraconvert` command.


## Key geofetch features:

- Works with GEO and SRA metadata
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- Can search GEO to find relevant data
- Can be used either as a command-line tool or from within Python using an API


## Docs

---
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url = {https://doi.org/10.1093/bioinformatics/btad069},
eprint = {https://academic.oup.com/bioinformatics/article-pdf/39/3/btad069/49407404/btad069.pdf},
}
```
```

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