The MonoAlg3D is a program for solving the 3D monodomain equation by applying the Finite Volume Method.
- Linux-based operating system
- Nvidia Driver
- CUDA library
Ubuntu: Refer to the ubuntu guide
Fedora: Refer to the fedora guide
$ ./build.shThe binary files will be saved in the bin folder.
$ bin/MonoAlg3D -c example_configs/cuboid_ohara.ini The output will be saved in the VTK format. In order to see the results you can use Paraview (https://www.paraview.org/) or the compiled visualization tool in bin/MonoAlg3D_visualizer. You can also set the output to plain text, by changing the option vtk_output to false in the configuration file. The text format is defined as following:
- Each line represents a Volume
- Each volume is represented by its center point (X, Y, and Z), the value of half of its side length and the calculated V
Example file:
850,850,950,50,-85
850,950,950,50,-85
850,950,850,50,-85
This file represents 3 volumes with 100 micrometer of side. The first volume is centered at at 850,850,950 and the calculated V is -85 mV.
Oliveira RS, Rocha BM, Burgarelli D, Meira Jr W, Constantinides C, dos Santos RW. Performance evaluation of GPU parallelization, space‐time adaptive algorithms, and their combination for simulating cardiac electrophysiology. Int J Numer Meth Biomed Engng. 2018;34:e2913. https://doi.org/10.1002/cnm.2913
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