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update readme and switch over to shiny-workflow for r-cmd check
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
on: | ||
push: | ||
branches: [main, master] | ||
pull_request: | ||
branches: [main, master] | ||
workflow_call: | ||
inputs: | ||
extra-packages: | ||
type: string | ||
default: "" | ||
required: false | ||
cache-version: | ||
type: string | ||
default: "2" | ||
required: false | ||
pandoc-version: | ||
type: string | ||
default: "3.x" | ||
required: false | ||
extra-check-args: | ||
type: string | ||
# default: '"--run-donttest", "--no-manual", "--as-cran"' | ||
default: "NULL" | ||
required: false | ||
macOS: | ||
type: string | ||
default: "macOS-latest" | ||
required: false | ||
windows: | ||
type: string | ||
default: "windows-latest" | ||
required: false | ||
ubuntu: | ||
type: string | ||
required: false | ||
# To test more versions, they must be separated by a space. Ex: `"ubuntu-18.04 ubuntu-20.04` | ||
default: "ubuntu-20.04" | ||
minimum-r-version: | ||
type: string | ||
required: false | ||
default: "" | ||
force-windows-src: | ||
type: boolean | ||
required: false | ||
default: false | ||
rtools-35: | ||
type: boolean | ||
default: true | ||
required: false | ||
rtools-40: | ||
type: boolean | ||
default: true | ||
required: false | ||
|
||
name: R-CMD-check | ||
|
||
jobs: | ||
setup: | ||
name: setup | ||
runs-on: ubuntu-latest | ||
outputs: | ||
config: ${{ steps.config.outputs.config }} | ||
steps: | ||
# - name: devel | ||
# id: devel | ||
# uses: r-lib/actions/setup-r@v2 | ||
# with: | ||
# r-version: devel | ||
# install-r: false | ||
|
||
- name: release | ||
id: release | ||
uses: r-lib/actions/setup-r@v2 | ||
with: | ||
r-version: release | ||
install-r: false | ||
|
||
- name: oldrel-1 | ||
id: oldrel-1 | ||
uses: r-lib/actions/setup-r@v2 | ||
with: | ||
r-version: oldrel-1 | ||
install-r: false | ||
|
||
- name: oldrel-2 | ||
id: oldrel-2 | ||
uses: r-lib/actions/setup-r@v2 | ||
with: | ||
r-version: oldrel-2 | ||
install-r: false | ||
|
||
- name: oldrel-3 | ||
id: oldrel-3 | ||
uses: r-lib/actions/setup-r@v2 | ||
with: | ||
r-version: oldrel-3 | ||
install-r: false | ||
|
||
- name: oldrel-4 | ||
id: oldrel-4 | ||
uses: r-lib/actions/setup-r@v2 | ||
with: | ||
r-version: oldrel-4 | ||
install-r: false | ||
|
||
- name: Checkout GitHub repo | ||
uses: rstudio/shiny-workflows/.github/internal/checkout@v1 | ||
|
||
# R is a pre-installed software | ||
- name: Config | ||
id: config | ||
shell: Rscript {0} | ||
run: | | ||
mac <- "${{ inputs.macOS }}" | ||
windows <- "${{ inputs.windows }}" | ||
ubuntu <- strsplit("${{ inputs.ubuntu }}", "[[:space:],]+")[[1]] | ||
has_src <- dir.exists("src") | ||
min_r_ver <- "${{ inputs.minimum-r-version }}" | ||
test_on_rtools35 <- identical("${{ inputs.rtools-35 }}", "true") | ||
test_on_rtools40 <- identical("${{ inputs.rtools-40 }}", "true") | ||
force_windows_src <- identical("${{ inputs.force-windows-src }}", "true") | ||
if (force_windows_src) has_src <- TRUE | ||
rver <- list( | ||
# devel = "${{ steps.devel.outputs.installed-r-version }}", | ||
# When R 4.3 was released, R version 4.4.0 was not recognized. | ||
# However, `"devel"` is recognized within `r-lib/actions/setup-r`. | ||
devel = "devel", | ||
release = "${{ steps.release.outputs.installed-r-version }}", | ||
oldrel1 = "${{ steps.oldrel-1.outputs.installed-r-version }}", | ||
oldrel2 = "${{ steps.oldrel-2.outputs.installed-r-version }}", | ||
oldrel3 = "${{ steps.oldrel-3.outputs.installed-r-version }}", | ||
oldrel4 = "${{ steps.oldrel-4.outputs.installed-r-version }}" | ||
) | ||
job <- function(os, r, ...) { | ||
list(os = os, r = r, ...) | ||
} | ||
is_valid_os <- function(os, r_ver = "") { | ||
if (identical(os, "false")) return(FALSE) | ||
if (identical(os, "")) return(FALSE) | ||
if (any(nchar(c(r_ver, min_r_ver)) == 0)) return(TRUE) | ||
if (identical(r_ver, "devel")) return(TRUE) | ||
r_ver >= min_r_ver | ||
} | ||
config <- c( | ||
list( | ||
if (is_valid_os(mac, rver$release)) job(mac, rver$release), | ||
if (has_src && is_valid_os(windows, "devel")) job(windows, "devel", "rtools-version" = "44"), | ||
if (is_valid_os(windows, rver$release)) job(windows, rver$release, "rtools-version" = "43"), | ||
if (has_src && is_valid_os(windows, "4.2")) job(windows, "4.2", "rtools-version" = "42"), | ||
if (has_src && test_on_rtools40 && is_valid_os(windows, "4.1")) job(windows, "4.1"), | ||
if (has_src && test_on_rtools35 && is_valid_os(windows, "3.6")) job(windows, "3.6"), | ||
if (is_valid_os(ubuntu, rver$devel)) job(ubuntu[[1]], rver$devel, "http-user-agent" = "release") | ||
), | ||
if (is_valid_os(ubuntu)) | ||
unlist(recursive = FALSE, lapply(ubuntu, function(ubuntu_) { | ||
list( | ||
if (is_valid_os(ubuntu_, rver$release)) job(ubuntu_, rver$release), | ||
if (is_valid_os(ubuntu_, rver$oldrel1)) job(ubuntu_, rver$oldrel1), | ||
if (is_valid_os(ubuntu_, rver$oldrel2)) job(ubuntu_, rver$oldrel2), | ||
if (is_valid_os(ubuntu_, rver$oldrel3)) job(ubuntu_, rver$oldrel3), | ||
if (is_valid_os(ubuntu_, rver$oldrel4)) job(ubuntu_, rver$oldrel4) | ||
) | ||
})) | ||
) | ||
## Drop NULLs | ||
config <- config[!vapply(config, is.null, logical(1))] | ||
## Convert to JSON manually to save 10s installing `jsonlite` | ||
join_and_wrap <- function(x, start, end, sep = ",") { | ||
paste0(start, paste0(x, collapse = sep), end) | ||
} | ||
entries_json <- vapply(config, character(1), FUN = function(entry) { | ||
join_and_wrap( | ||
paste0("\"", names(entry), "\":\"", unname(entry), "\""), | ||
"{", "}" | ||
) | ||
}) | ||
config_json <- join_and_wrap(entries_json, "[", "]") | ||
cat("Config:\n", config_json, "\n", sep = "") | ||
cat("config=", config_json, "\n", file = Sys.getenv("GITHUB_OUTPUT"), sep = "", append = TRUE) | ||
R-CMD-check: | ||
runs-on: ${{ matrix.config.os }} | ||
|
||
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
|
||
needs: [setup] | ||
strategy: | ||
fail-fast: false | ||
matrix: | ||
config: | ||
- {os: macos-latest, r: 'release'} | ||
- {os: windows-latest, r: 'release'} | ||
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | ||
- {os: ubuntu-latest, r: 'release'} | ||
- {os: ubuntu-latest, r: 'oldrel-1'} | ||
config: ${{ fromJSON(needs.setup.outputs.config) }} | ||
|
||
env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
R_KEEP_PKG_SOURCE: yes | ||
|
||
steps: | ||
- uses: actions/checkout@v4 | ||
|
||
- uses: r-lib/actions/setup-pandoc@v2 | ||
- name: Checkout GitHub repo | ||
uses: rstudio/shiny-workflows/.github/internal/checkout@v1 | ||
|
||
- uses: r-lib/actions/setup-r@v2 | ||
- name: Install R, system dependencies, and package dependencies | ||
uses: rstudio/shiny-workflows/setup-r-package@v1 | ||
with: | ||
rtools-version: ${{ matrix.config.rtools-version }} | ||
pandoc-version: ${{ inputs.pandoc-version }} | ||
r-version: ${{ matrix.config.r }} | ||
http-user-agent: ${{ matrix.config.http-user-agent }} | ||
use-public-rspm: true | ||
cache-version: ${{ inputs.cache-version }} | ||
needs: check | ||
extra-packages: | | ||
any::rcmdcheck | ||
${{ inputs.extra-packages }} | ||
- uses: r-lib/actions/setup-r-dependencies@v2 | ||
- name: Check package | ||
uses: r-lib/actions/check-r-package@v2 | ||
timeout-minutes: 30 | ||
with: | ||
extra-packages: any::rcmdcheck | ||
needs: check | ||
check-dir: '"check"' # matches directory below | ||
args: 'c(${{ inputs.extra-check-args }}, "--no-manual", "--as-cran")' | ||
|
||
- uses: r-lib/actions/check-r-package@v2 | ||
- name: "Show `testthat` output" | ||
if: always() | ||
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
shell: bash | ||
- name: "Show install logs" | ||
if: always() | ||
run: find check -name '00install.out' -exec cat '{}' \; || true | ||
shell: bash | ||
- name: "Upload 'Check package' results" | ||
if: failure() | ||
uses: actions/upload-artifact@main | ||
with: | ||
upload-snapshots: true | ||
build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")' | ||
name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results | ||
path: "check" |
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