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diff --git a/source/case_5.rst b/source/case_5.rst
diff --git a/source/images/case5_EQGen1.png b/source/images/case5_EQGen1.png
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diff --git a/source/images/case5_manifestationcurve.png b/source/images/case5_manifestationcurve.png
diff --git a/source/images/sanger2024-ai.png → source/images/case5_sanger2024-ai.png b/source/images/sanger2024-ai.png → source/images/case5_sanger2024-ai.png
diff --git a/source/images/sanger2024-krig.png → source/images/case5_sanger2024-krig.png b/source/images/sanger2024-krig.png → source/images/case5_sanger2024-krig.png
diff --git a/source/images/sanger2024-roc.png → source/images/case5_sanger2024-roc.png b/source/images/sanger2024-roc.png → source/images/case5_sanger2024-roc.png
diff --git a/source/images/case5_sanger_lpi.png b/source/images/case5_sanger_lpi.png
diff --git a/source/images/case5_sanger_pliq.png b/source/images/case5_sanger_pliq.png
diff --git a/source/images/zhu2017.png → source/images/case5_zhu2017.png b/source/images/zhu2017.png → source/images/case5_zhu2017.png
diff --git a/source/images/case5_zhu_pliq.png b/source/images/case5_zhu_pliq.png
diff --git a/source/images/manifestationcurve.png b/source/images/manifestationcurve.png
diff --git a/source/references.bib b/source/references.bib
@@ -44,6 +44,17 @@ @article{RB2020
   publisher={Elsevier}
 }
 
+@article{Gey2020,
+  title={Fragility functions for liquefaction-induced ground failure},
+  author={Geyin, Mertcan and Maurer, Brett W},
+  journal={Journal of Geotechnical and Geoenvironmental Engineering},
+  volume={146},
+  number={12},
+  pages={04020142},
+  year={2020},
+  publisher={American Society of Civil Engineers}
+}
+
 @book{Kramer1996,
 author = {Kramer, S. L.},
 publisher = {Pearson},
@@ -54,14 +65,3 @@ @book{Kramer1996
 title = {Geotechnical Earthquake Engineering},
 year = {1996}
 }
-
-@article{Zhu2017,
-  title={An updated geospatial liquefaction model for global application},
-  author={Zhu, Jing and Baise, Laurie G and Thompson, Eric M},
-  journal={Bulletin of the Seismological Society of America},
-  volume={107},
-  number={3},
-  pages={1365--1385},
-  year={2017},
-  publisher={Seismological Society of America}
-}
diff --git a/test/.doctrees/case_0.doctree b/test/.doctrees/case_0.doctree
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diff --git a/test/.doctrees/case_2.doctree b/test/.doctrees/case_2.doctree
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diff --git a/test/.doctrees/case_5.doctree b/test/.doctrees/case_5.doctree
diff --git a/test/.doctrees/case_6.doctree b/test/.doctrees/case_6.doctree
diff --git a/test/.doctrees/case_7.doctree b/test/.doctrees/case_7.doctree
diff --git a/test/.doctrees/environment.pickle b/test/.doctrees/environment.pickle
diff --git a/test/.doctrees/index.doctree b/test/.doctrees/index.doctree
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diff --git a/test/_images/case2_Input_Motion_TF.png b/test/_images/case2_Input_Motion_TF.png
diff --git a/test/_images/case2_Normalized_RatioA_histogram.png b/test/_images/case2_Normalized_RatioA_histogram.png
diff --git a/test/_images/case2_Normalized_RatioV_histogram.png b/test/_images/case2_Normalized_RatioV_histogram.png
diff --git a/test/_images/case2_RVTab_Workflow_TF.png b/test/_images/case2_RVTab_Workflow_TF.png
diff --git a/test/_images/case2_Resonance_Building_Example_TF.png b/test/_images/case2_Resonance_Building_Example_TF.png
diff --git a/test/_images/case2_Results_Workflow_TF.png b/test/_images/case2_Results_Workflow_TF.png
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diff --git a/test/_images/case2_SpectralAcc_Results_TF.png b/test/_images/case2_SpectralAcc_Results_TF.png
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diff --git a/test/_images/case2_TF_Rock_to_Soil1.png b/test/_images/case2_TF_Rock_to_Soil1.png
diff --git a/test/_images/case2_UQTab_Workflow_TF.png b/test/_images/case2_UQTab_Workflow_TF.png
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diff --git a/test/_images/case5_EQGen8.png b/test/_images/case5_EQGen8.png
diff --git a/test/_images/case5_EQGen9.png b/test/_images/case5_EQGen9.png
diff --git a/test/_images/case5_manifestationcurve.png b/test/_images/case5_manifestationcurve.png
diff --git a/test/_images/sanger2024-ai.png → test/_images/case5_sanger2024-ai.png b/test/_images/sanger2024-ai.png → test/_images/case5_sanger2024-ai.png
diff --git a/test/_images/sanger2024-krig.png → test/_images/case5_sanger2024-krig.png b/test/_images/sanger2024-krig.png → test/_images/case5_sanger2024-krig.png
diff --git a/test/_images/sanger2024-roc.png → test/_images/case5_sanger2024-roc.png b/test/_images/sanger2024-roc.png → test/_images/case5_sanger2024-roc.png
diff --git a/test/_images/case5_sanger_lpi.png b/test/_images/case5_sanger_lpi.png
diff --git a/test/_images/case5_sanger_pliq.png b/test/_images/case5_sanger_pliq.png
diff --git a/test/_images/zhu2017.png → test/_images/case5_zhu2017.png b/test/_images/zhu2017.png → test/_images/case5_zhu2017.png
diff --git a/test/_images/case5_zhu_pliq.png b/test/_images/case5_zhu_pliq.png
diff --git a/test/_images/manifestationcurve.png b/test/_images/manifestationcurve.png
diff --git a/test/_images/sanger2024.png b/test/_images/sanger2024.png
diff --git a/test/_sources/case_0.rst.txt b/test/_sources/case_0.rst.txt
@@ -49,6 +49,7 @@ Learning Objectives
 #. Develop a suitable background for using HPC resources.
 #. Introduce/revise concepts related to structural and geotechnical engineering including UQ concepts, FEM, PB, etc.
 #. Provide a working knowledge for selecting, using, and interpreting tools for Structural and geotechnical design and analysis.
+#. Introduce markup language to develop easy-to-read, easy-to-write documents in the sphinx python package.
 
 
 Introduction

diff --git a/test/_sources/case_2.rst.txt b/test/_sources/case_2.rst.txt
diff --git a/test/_sources/case_5.rst.txt b/test/_sources/case_5.rst.txt
diff --git a/test/_static/pygments.css b/test/_static/pygments.css
@@ -17,7 +17,6 @@ span.linenos.special { color: #000000; background-color: #ffffc0; padding-left:
 .highlight .cs { color: #3D7B7B; font-style: italic } /* Comment.Special */
 .highlight .gd { color: #A00000 } /* Generic.Deleted */
 .highlight .ge { font-style: italic } /* Generic.Emph */
-.highlight .ges { font-weight: bold; font-style: italic } /* Generic.EmphStrong */
 .highlight .gr { color: #E40000 } /* Generic.Error */
 .highlight .gh { color: #000080; font-weight: bold } /* Generic.Heading */
 .highlight .gi { color: #008400 } /* Generic.Inserted */

diff --git a/test/case_0.html b/test/case_0.html
@@ -5,7 +5,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>Course Introduction &mdash; CESG-599 1.0.0 documentation</title>
-      <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
+      <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=92fd9be5" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="_static/css/custom.css" />
 
@@ -138,6 +138,7 @@ <h2>Learning Objectives<a class="headerlink" href="#learning-objectives" title="
 <li><p>Develop a suitable background for using HPC resources.</p></li>
 <li><p>Introduce/revise concepts related to structural and geotechnical engineering including UQ concepts, FEM, PB, etc.</p></li>
 <li><p>Provide a working knowledge for selecting, using, and interpreting tools for Structural and geotechnical design and analysis.</p></li>
+<li><p>Introduce markup language to develop easy-to-read, easy-to-write documents in the sphinx python package.</p></li>
 </ol>
 </section>
 <section id="introduction">
@@ -194,8 +195,8 @@ <h2>EXAMPLELS of LISTS, FIGURES, TABLE, REFERENCE, etc<a class="headerlink" href
 <section id="id1">
 <h2>SimCenter Tool Used<a class="headerlink" href="#id1" title="Link to this heading"></a></h2>
 <p>blablabla</p>
-<table class="docutils align-default" id="id9">
-<caption><span class="caption-text">Title</span><a class="headerlink" href="#id9" title="Link to this table"></a></caption>
+<table class="docutils align-default" id="id10">
+<caption><span class="caption-text">Title</span><a class="headerlink" href="#id10" title="Link to this table"></a></caption>
 <colgroup>
 <col style="width: 25.0%" />
 <col style="width: 25.0%" />
@@ -285,6 +286,10 @@ <h2>Remarks<a class="headerlink" href="#id2" title="Link to this heading"></a
 <span class="label"><span class="fn-bracket">[</span>RB20<span class="fn-bracket">]</span></span>
 <p>V. Rashidian and L. G. Baise. Regional efficacy of a global geospatial liquefaction model. <em>Engineering geology</em>, 272:105644, 2020.</p>
 </div>
+<div class="citation" id="id5" role="doc-biblioentry">
+<span class="label"><span class="fn-bracket">[</span>Saf73<span class="fn-bracket">]</span></span>
+<p>H. S. Saffir. Hurricane wind and storm surge. <em>The Military Engineering</em>, pages 4–5, 1973.</p>
+</div>
 <div class="citation" id="id7" role="doc-biblioentry">
 <span class="label"><span class="fn-bracket">[</span>SGM24<span class="fn-bracket">]</span></span>
 <p>M. D. Sanger, M. Geyin, and B. W. Maurer. A global liquefaction model for rapid response and scenario modeling. <em>Manuscript in preparation</em>, 2024.</p>

diff --git a/test/case_1.html b/test/case_1.html
@@ -5,7 +5,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
   <title>quoFEM - Settlements &mdash; CESG-599 1.0.0 documentation</title>
-      <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
+      <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=92fd9be5" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="_static/css/custom.css" />
 
@@ -113,8 +113,8 @@ <h2>Project Description<a class="headerlink" href="#project-description" title="
 <figure class="align-default">
 <img alt="images/ProblemScenarioP1.png" src="images/ProblemScenarioP1.png" />
 </figure>
-<table class="docutils align-default" id="id9">
-<caption><span class="caption-text">Soil Profile Parameters</span><a class="headerlink" href="#id9" title="Link to this table"></a></caption>
+<table class="docutils align-default" id="id10">
+<caption><span class="caption-text">Soil Profile Parameters</span><a class="headerlink" href="#id10" title="Link to this table"></a></caption>
 <colgroup>
 <col style="width: 25.0%" />
 <col style="width: 25.0%" />