pangaea-data-publisher · huberrob · Jan 12, 2024 · Jan 9, 2024 · Jan 8, 2024
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -22,6 +22,13 @@ repos:
     args: [--autofix, --indent, '2']
   - id: pretty-format-yaml
     args: [--autofix, --indent, '2']
+- repo: https://github.com/Lucas-C/pre-commit-hooks
+  rev: v1.5.4
+  hooks:
+  - id: insert-license
+    types: [python]
+    args: [--license-filepath=docs/license_header.txt]
+    exclude: docs
 - repo: https://github.com/astral-sh/ruff-pre-commit
   rev: v0.1.11
   hooks:

diff --git a/docs/license_header.txt b/docs/license_header.txt
@@ -0,0 +1,3 @@
+SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
+
+SPDX-License-Identifier: MIT
diff --git a/examples/mass_assessment/fuji_mass_eval_template.py b/examples/mass_assessment/fuji_mass_eval_template.py
@@ -1,5 +1,9 @@
 #!/usr/bin/env python3
 
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
+#
+# SPDX-License-Identifier: MIT
+
 import json
 import os
 

diff --git a/fuji_server/__init__.py b/fuji_server/__init__.py
@@ -1,5 +1,9 @@
 # -*- coding: utf-8 -*-
 
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
+#
+# SPDX-License-Identifier: MIT
+
 # flake8: noqa
 from __future__ import absolute_import
 

diff --git a/fuji_server/__main__.py b/fuji_server/__main__.py
@@ -1,26 +1,8 @@
 #!/usr/bin/env python3
 
-# MIT License
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
 #
-# Copyright (c) 2020 PANGAEA (https://www.pangaea.de/)
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in all
-# copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-# SOFTWARE.
+# SPDX-License-Identifier: MIT
 
 import argparse
 import configparser

diff --git a/fuji_server/app.py b/fuji_server/app.py
@@ -1,24 +1,7 @@
-# MIT License
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
 #
-# Copyright (c) 2020 PANGAEA (https://www.pangaea.de/)
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in all
-# copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-# SOFTWARE.
+# SPDX-License-Identifier: MIT
+
 import json
 import os
 from pathlib import Path

diff --git a/fuji_server/config/users.py b/fuji_server/config/users.py
@@ -1,2 +1,6 @@
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
+#
+# SPDX-License-Identifier: MIT
+
 # user dictionary: key = username value = password
 fuji_users = {"marvel": "wonderwoman"}
diff --git a/fuji_server/controllers/__init__.py b/fuji_server/controllers/__init__.py
@@ -1,23 +1,3 @@
-################################################################################
-# MIT License
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
 #
-# Copyright (c) 2020 PANGAEA (https://www.pangaea.de/)
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in all
-# copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-# SOFTWARE.
-################################################################################
+# SPDX-License-Identifier: MIT
diff --git a/fuji_server/controllers/authorization_controller.py b/fuji_server/controllers/authorization_controller.py
@@ -1,26 +1,7 @@
-################################################################################
-# MIT License
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
 #
-# Copyright (c) 2020 PANGAEA (https://www.pangaea.de/)
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in all
-# copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-# SOFTWARE.
-################################################################################
+# SPDX-License-Identifier: MIT
+
 """
 Controller generated to handled auth operation described at:
 https://connexion.readthedocs.io/en/latest/security.html

diff --git a/fuji_server/controllers/fair_check.py b/fuji_server/controllers/fair_check.py
@@ -1,24 +1,7 @@
-# MIT License
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
 #
-# Copyright (c) 2020 PANGAEA (https://www.pangaea.de/)
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in all
-# copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-# SOFTWARE.
+# SPDX-License-Identifier: MIT
+
 import hashlib
 import io
 import logging

diff --git a/fuji_server/controllers/fair_metric_controller.py b/fuji_server/controllers/fair_metric_controller.py
@@ -1,29 +1,7 @@
-"""
-FAIR Metric controller.
-"""
-################################################################################
-# MIT License
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
 #
-# Copyright (c) 2020 PANGAEA (https://www.pangaea.de/)
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in all
-# copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-# SOFTWARE.
-################################################################################
+# SPDX-License-Identifier: MIT
+
 from fuji_server.helper.metric_helper import MetricHelper
 
 

diff --git a/fuji_server/controllers/fair_object_controller.py b/fuji_server/controllers/fair_object_controller.py
@@ -1,26 +1,6 @@
-################################################################################
-# MIT License
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
 #
-# Copyright (c) 2020 PANGAEA (https://www.pangaea.de/)
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in all
-# copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-# SOFTWARE.
-################################################################################
+# SPDX-License-Identifier: MIT
 
 import datetime
 

diff --git a/fuji_server/controllers/harvest_controller.py b/fuji_server/controllers/harvest_controller.py
@@ -1,27 +1,6 @@
-################################################################################
-# MIT License
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
 #
-# Copyright (c) 2020 PANGAEA (https://www.pangaea.de/)
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in all
-# copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-# SOFTWARE.
-################################################################################
-
+# SPDX-License-Identifier: MIT
 
 import connexion
 

diff --git a/fuji_server/encoder.py b/fuji_server/encoder.py
@@ -1,4 +1,7 @@
-# from connexion.apps.flask_app import FlaskJSONEncoder
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
+#
+# SPDX-License-Identifier: MIT
+
 from connexion.jsonifier import JSONEncoder
 
 from fuji_server.models.base_model_ import Model

diff --git a/fuji_server/evaluators/__init__.py b/fuji_server/evaluators/__init__.py
@@ -0,0 +1,3 @@
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
+#
+# SPDX-License-Identifier: MIT
diff --git a/fuji_server/evaluators/fair_evaluator.py b/fuji_server/evaluators/fair_evaluator.py
@@ -1,24 +1,6 @@
-# MIT License
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
 #
-# Copyright (c) 2020 PANGAEA (https://www.pangaea.de/)
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in all
-# copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-# SOFTWARE.
+# SPDX-License-Identifier: MIT
 
 from fuji_server.helper.metadata_mapper import Mapper
 from fuji_server.models.fair_result_common_score import FAIRResultCommonScore

diff --git a/fuji_server/evaluators/fair_evaluator_community_metadata.py b/fuji_server/evaluators/fair_evaluator_community_metadata.py
@@ -1,25 +1,6 @@
-# MIT License
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
 #
-# Copyright (c) 2020 PANGAEA (https://www.pangaea.de/)
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in all
-# copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-# SOFTWARE.
-
+# SPDX-License-Identifier: MIT
 
 from tldextract import extract
 

diff --git a/fuji_server/evaluators/fair_evaluator_data_access_level.py b/fuji_server/evaluators/fair_evaluator_data_access_level.py
@@ -1,24 +1,6 @@
-# MIT License
+# SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)
 #
-# Copyright (c) 2020 PANGAEA (https://www.pangaea.de/)
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in all
-# copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-# SOFTWARE.
+# SPDX-License-Identifier: MIT
 
 import re
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,3 @@
		SPDX-FileCopyrightText: 2020 PANGAEA (https://www.pangaea.de/)

		SPDX-License-Identifier: MIT