build(deps): bump actions/checkout from 3 to 4

[dependabot]

Bumps actions/checkout from 3 to 4.

Release notes

Sourced from actions/checkout's releases.

v4.0.0

What's Changed

• Update default runtime to node20 by @​takost in actions/checkout#1436
• Support fetching without the --progress option by @​simonbaird in actions/checkout#1067
• Release 4.0.0 by @​takost in actions/checkout#1447

New Contributors

• @​takost made their first contribution in actions/checkout#1436
• @​simonbaird made their first contribution in actions/checkout#1067

Full Changelog: actions/checkout@v3...v4.0.0

v3.6.0

What's Changed

• Mark test scripts with Bash'isms to be run via Bash by @​dscho in actions/checkout#1377
• Add option to fetch tags even if fetch-depth > 0 by @​RobertWieczoreck in actions/checkout#579
• Release 3.6.0 by @​luketomlinson in actions/checkout#1437

New Contributors

• @​RobertWieczoreck made their first contribution in actions/checkout#579
• @​luketomlinson made their first contribution in actions/checkout#1437

Full Changelog: actions/checkout@v3.5.3...v3.6.0

v3.5.3

What's Changed

• Fix: Checkout Issue in self hosted runner due to faulty submodule check-ins by @​megamanics in actions/checkout#1196
• Fix typos found by codespell by @​DimitriPapadopoulos in actions/checkout#1287
• Add support for sparse checkouts by @​dscho and @​dfdez in actions/checkout#1369
• Release v3.5.3 by @​TingluoHuang in actions/checkout#1376

New Contributors

• @​megamanics made their first contribution in actions/checkout#1196
• @​DimitriPapadopoulos made their first contribution in actions/checkout#1287
• @​dfdez made their first contribution in actions/checkout#1369

Full Changelog: actions/checkout@v3...v3.5.3

v3.5.2

What's Changed

• Fix: Use correct API url / endpoint in GHES by @​fhammerl in actions/checkout#1289 based on #1286 by @​1newsr

Full Changelog: actions/checkout@v3.5.1...v3.5.2

v3.5.1

What's Changed

• Improve checkout performance on Windows runners by upgrading @​actions/github dependency by @​BrettDong in actions/checkout#1246

New Contributors

• @​BrettDong made their first contribution in actions/checkout#1246

... (truncated)

Changelog

Sourced from actions/checkout's changelog.

Changelog

v4.1.0

• Add support for partial checkout filters

v4.0.0

• Support fetching without the --progress option
• Update to node20

v3.6.0

• Fix: Mark test scripts with Bash'isms to be run via Bash
• Add option to fetch tags even if fetch-depth > 0

v3.5.3

• Fix: Checkout fail in self-hosted runners when faulty submodule are checked-in
• Fix typos found by codespell
• Add support for sparse checkouts

v3.5.2

• Fix api endpoint for GHES

v3.5.1

• Fix slow checkout on Windows

v3.5.0

• Add new public key for known_hosts

v3.4.0

• Upgrade codeql actions to v2
• Upgrade dependencies
• Upgrade @​actions/io

v3.3.0

• Implement branch list using callbacks from exec function
• Add in explicit reference to private checkout options
• [Fix comment typos (that got added in #770)](actions/checkout#1057)

v3.2.0

• Add GitHub Action to perform release
• Fix status badge
• Replace datadog/squid with ubuntu/squid Docker image
• Wrap pipeline commands for submoduleForeach in quotes
• Update @​actions/io to 1.1.2
• Upgrading version to 3.2.0

v3.1.0

• Use @​actions/core saveState and getState
• Add github-server-url input

v3.0.2

... (truncated)

Commits

• 8ade135 Prepare 4.1.0 release (#1496)
• c533a0a Add support for partial checkout filters (#1396)
• 72f2cec Update README.md for V4 (#1452)
• 3df4ab1 Release 4.0.0 (#1447)
• 8b5e8b7 Support fetching without the --progress option (#1067)
• 97a652b Update default runtime to node20 (#1436)
• See full diff in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

---

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[github-actions]

Coverage

File	Stmts	Miss	Cover	Missing
fuji_server
__main__.py	54	54	0%	26–106
util.py	54	31	37%	15, 19–36, 50–53, 62, 73–78, 91–96, 110, 130, 143
fuji_server/app
fuji_app.py	17	1	89%	50
fuji_server/controllers
authorization_controller.py	9	2	69%	47–49
fair_check.py	419	46	84%	128–>130, 143, 145, 186–>201, 195–200, 203, 215–>218, 227–231, 285–286, 289–297, 329, 332, 336–>365, 339–>342, 342–>363, 344–345, 348–360, 367, 382–>exit, 392–393, 401–404, 550–562, 575, 579–>567, 597–>596, 599–>596, 611–613, 662–>661
fair_metric_controller.py	16	12	20%	36–42, 49–55
fair_object_controller.py	130	13	78%	51–>215, 88, 93–95, 99, 105, 134–>136, 136–>138, 139, 141, 142–>144, 144–>146, 146–>148, 148–>150, 150–>152, 152–>154, 154–>156, 157, 158–>160, 160–>162, 162–>164, 164–>166, 166–>168, 168–>170, 170–>172, 184–185, 187, 195, 199–>202
harvest_controller.py	31	21	26%	49–91
fuji_server/evaluators
fair_evaluator.py	88	3	92%	106, 135–>exit, 159–>136, 180–>182, 183–>185, 191, 198
fair_evaluator_community_metadata.py	240	71	61%	63–81, 87–>98, 96–97, 99, 107–134, 138–164, 180–>187, 183–>181, 187–>197, 194–196, 205–>231, 207–>231, 219–>216, 221–>216, 227, 237, 251, 259–>261, 261–>293, 263–>293, 266, 268, 270, 272–290, 297–>315, 304–>301, 306–>315, 324–326, 328–337, 341–>359, 348–>345, 350–>359, 393–>395, 396, 397–>399, 408
fair_evaluator_data_access_level.py	142	32	70%	78–>109, 80–>79, 99–>104, 103, 113–>127, 126, 131–>153, 136–148, 161–169, 175–>214, 180, 182–>214, 187–>182, 190–>208, 210, 230, 233–>235, 236, 241–242, 244–246, 248–>251, 252–253, 257–264, 266–>268, 280
fair_evaluator_data_content_metadata.py	186	122	28%	52–>55, 54, 63, 68, 84–90, 95–>108, 97–>100, 101–102, 103–>108, 111–128, 131–140, 143–155, 158–250, 253–289, 302–>304, 304–>323, 306–316
fair_evaluator_data_identifier_included.py	75	47	25%	55–81, 84–102, 121–150
fair_evaluator_data_provenance.py	71	11	78%	53–>102, 80–88, 92–>101, 106–>137, 124–131, 146–>148, 149
fair_evaluator_file_format.py	127	86	24%	53–>62, 57–60, 64–133, 143–>203, 146–202, 204–205, 215
fair_evaluator_formal_metadata.py	84	27	61%	53–>96, 60–>71, 72–77, 82, 102–>206, 108–114, 123–>136, 137–147, 154–196, 201–>206, 219, 220–>222
fair_evaluator_license.py	166	35	70%	61, 62–>exit, 67–>63, 72, 75, 77–>79, 93, 112–116, 122–124, 127–128, 139, 155, 156–>168, 177–>188, 180–187, 192–>204, 203, 209–>255, 211, 215–222, 236–239, 241–>234, 244, 250–>255, 265–>267, 267–>270
fair_evaluator_metadata_identifier_included.py	53	38	19%	55–80, 83–108
fair_evaluator_metadata_preservation.py	25	1	90%	50–>64, 63
fair_evaluator_minimal_metadata.py	101	9	82%	64–>93, 80, 82, 87, 95, 99–>142, 101–>119, 103–>119, 105, 106–>108, 109, 117–>116, 135–136, 146–>158, 148–>158, 162, 178–>181, 181–>184, 184–>187
fair_evaluator_persistent_identifier_data.py	70	50	20%	57–66, 69–81, 84–112, 115–130
fair_evaluator_persistent_identifier_metadata.py	77	3	85%	55, 63–>62, 67–>69, 74–>91, 78–>76, 81, 86–>91, 95–>121, 98–>97, 107, 112–>117, 138–>140, 140–>143
fair_evaluator_related_resources.py	50	2	85%	51–>67, 66, 71–>84, 73–>80, 76, 78–>74, 80–>84, 94–>97
fair_evaluator_searchable.py	124	36	60%	81–124, 133–>176, 138–>137, 139–>137, 172, 180–>240, 189–>195, 190–>195, 193–>195, 196–201, 209–212, 219, 234, 249–>251, 252, 254
fair_evaluator_semantic_vocabulary.py	113	23	68%	55–>57, 57–>84, 60–83, 88–>100, 97, 106–>168, 109, 114–>125, 123, 125–>136, 133–>131, 148–>168, 155–162, 180–>184, 194–>201, 201–>209, 209–>211, 212
fair_evaluator_standardised_protocol_data.py	37	11	64%	53–>77, 57–71, 86
fair_evaluator_standardised_protocol_metadata.py	43	3	84%	54–>89, 64, 69–>84, 85–88, 98–>100
fair_evaluator_unique_identifier_data.py	72	56	16%	55–83, 86–115, 119–136
fair_evaluator_unique_identifier_metadata.py	72	15	72%	52, 60–>85, 68–>85, 79–>82, 89–>113, 93–98, 100–105, 107–112, 117–>exit, 124, 128–130
fuji_server/harvester
data_harvester.py	159	140	9%	20–29, 33–41, 45–52, 55–83, 86–182, 185–226
metadata_harvester.py	838	199	71%	61–>63, 67, 101–102, 106, 122, 128, 134–135, 141, 142–>exit, 178–>182, 179–>181, 199–200, 224–232, 239–241, 244–>246, 254–259, 260–>exit, 264, 266–290, 342–343, 344–>exit, 361–362, 386–389, 405, 407, 409, 412–465, 475–>478, 481–>479, 486, 492–>496, 495, 501–506, 523–>525, 546, 551–552, 555–>557, 558, 567, 568–>536, 582–590, 597–>606, 600–605, 616–618, 625–627, 631–>638, 635–637, 647–>659, 670, 677–>683, 680–>683, 689–695, 697–>726, 707–725, 727–>734, 730–731, 782–784, 789–>830, 806, 824, 830–>867, 859–861, 893, 923–924, 946–953, 989–1001, 1020, 1028–1031, 1036–1043, 1064–>1057, 1094, 1137, 1160–1161, 1166–1181, 1184–1193, 1215–1229, 1246, 1272–1278, 1285–>1318, 1294–>1303, 1307–>1311, 1323–>exit, 1330–1333, 1350, 1354–>1327, 1377–1379, 1399–>1327, 1411, 1438, 1457–>1481, 1459, 1464–1467, 1470, 1477–>1481, 1486, 1490, 1502, 1506–1511, 1515–>1533, 1530–1532, 1537–>1542, 1546–>1572, 1558–>1563, 1559–>exit
repository_harvester.py	10	10	0%	4–15
fuji_server/helper
catalogue_helper.py	18	5	75%	39–41, 60–61
catalogue_helper_datacite.py	23	5	70%	56–61
catalogue_helper_google_datasearch.py	123	102	12%	39–45, 48–56, 60–104, 107–115, 119–127, 131–150, 153–180, 183–184
catalogue_helper_mendeley_data.py	30	22	18%	28–29, 43–72
create_google_cache_db.py	8	8	0%	2–17
create_google_lists.py	8	8	0%	2–19
identifier_helper.py	182	66	59%	89–103, 110–>exit, 112–>202, 119, 121, 128–130, 132–134, 136–>171, 143–146, 150–152, 162–168, 171–>176, 174, 178, 180–>197, 182–>197, 183–>197, 192–>194, 194–>197, 203, 208–211, 221, 223–224, 240–>250, 243–249, 254–257, 263, 268–269, 282–287, 290, 293, 305
linked_vocab_helper.py	114	1	95%	25–>24, 37–>45, 87–>89, 91–>89, 100–>106, 132–>126, 148, 166–>165
log_message_filter.py	13	13	0%	24–43
metadata_collector.py	124	11	89%	71, 74, 181, 184, 273, 276, 279, 282, 285, 288, 291, 313–>exit, 316–>318, 319–>318
metadata_collector_datacite.py	54	11	71%	91–>134, 94–>134, 99–105, 116, 121, 128–132
metadata_collector_dublincore.py	82	11	85%	90–>213, 117, 120–121, 122–>213, 145, 147, 161–163, 172, 174–>178, 177, 180–>134, 211–212
metadata_collector_highwire_eprints.py	51	15	64%	72–>119, 87–93, 94–>82, 98–103, 104–>106, 107, 110, 115
metadata_collector_microdata.py	36	9	68%	60–65, 67–>70, 82–85
metadata_collector_opengraph.py	21	0	94%	52–>57, 57–>68
metadata_collector_ore_atom.py	40	34	10%	60–61, 73–113
metadata_collector_rdf.py	526	320	35%	113–117, 135–136, 146–148, 156–157, 175–176, 178–179, 181–182, 184–>204, 203, 223, 230–235, 260–263, 264–>328, 273–282, 286, 292–326, 329–345, 360, 366, 367–>380, 390–392, 396–>398, 399–411, 415, 421–426, 455–481, 491–>495, 496–>498, 503–513, 537–712, 727–741, 758–760, 765–770, 776–>779, 780, 783–>exit, 785–786, 790–>exit, 792–793, 806–814, 817–>849, 828–844, 849–>862, 864–>881, 870–879, 882, 887–981, 996–1061, 1074
metadata_collector_xml.py	226	39	81%	95–96, 118, 147–150, 152–156, 158–161, 163–166, 168–171, 174–175, 191–>190, 194–>200, 201–202, 204–205, 207–208, 217–218, 220–221, 223–224, 229, 230–>235, 240, 247–249, 257, 299–300, 303–304, 308–>283, 335, 337–>339, 341–>346, 343–>345, 346–>348, 396–>398, 399–>401
metadata_mapper.py	42	2	94%	30–>43, 37–38
metadata_provider.py	37	20	39%	79, 83, 87, 90–108
metadata_provider_csw.py	28	20	22%	47, 57–79, 82
metadata_provider_oai.py	33	4	85%	55, 75–>106, 96–102
metadata_provider_rss_atom.py	28	18	29%	57, 67–89, 92
metadata_provider_sparql.py	34	26	18%	58–59, 72–111, 114
metric_helper.py	94	26	64%	22, 31, 33–>35, 36, 37–>40, 48–53, 56, 66–69, 75, 88–>80, 95–101, 108–116, 119
preprocessor.py	477	142	70%	88–>90, 106, 110–>exit, 113–117, 123–126, 139–>exit, 148–>150, 158–>exit, 167–>exit, 183–>188, 204, 212–231, 242–244, 249–267, 288–301, 302–>exit, 325–330, 372–>exit, 381–>exit, 387–>389, 393, 399–>exit, 406, 411, 417–>exit, 424, 429, 435–>exit, 444–>exit, 454–>exit, 459–>461, 485–564, 569–573, 577–587, 597–>599, 605, 611, 624, 628–633, 637–639, 644, 649–>651, 655–>657, 661–>663
repository_helper.py	78	6	85%	53–>exit, 55–>62, 59, 71–>73, 77–>exit, 85–88, 96–>98, 98–>100, 112, 118–>exit, 136
request_helper.py	337	123	59%	83–85, 118, 119–>exit, 124, 131, 134, 143, 149–151, 158–>538, 178, 191–192, 194, 199–206, 212–228, 236–256, 269–270, 272, 274, 276, 278, 289–290, 292–296, 298–>300, 309, 315–322, 330, 335, 337, 345–>357, 348–354, 358–361, 363, 366–375, 377–378, 380–389, 392–420, 429–>501, 455–459, 463–467, 479–480, 496–497, 499–500, 512–514, 527–537
fuji_server/models
any_of_fair_results_items.py	12	3	79%	20–22, 33
base_model_.py	30	5	89%	22, 54, 58, 62, 66
body.py	77	7	93%	116, 164, 185, 231, 254, 277, 300
community_endorsed_standard.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
community_endorsed_standard_output.py	13	3	80%	24–26, 37
community_endorsed_standard_output_inner.py	47	1	99%	69
core_metadata.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
core_metadata_output.py	37	6	85%	58, 78–86, 128
data_access_level.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
data_access_output.py	29	2	93%	41, 63
data_content_metadata.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
data_content_metadata_output.py	27	1	97%	44
data_content_metadata_output_inner.py	33	12	74%	30–39, 50, 60, 71, 81, 92, 102, 113
data_file_format.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
data_file_format_output.py	13	1	93%	34
data_file_format_output_inner.py	47	18	74%	39–58, 69, 79, 90, 100, 111, 121, 132, 142, 153, 163, 174
data_provenance.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
data_provenance_output.py	27	1	97%	52
data_provenance_output_inner.py	26	1	97%	41
debug.py	12	3	79%	20–22, 33
fair_result_common.py	74	35	61%	47–72, 83, 93, 103–106, 116, 126–129, 139, 149–152, 162, 173, 183, 193–199, 209, 219–222, 232, 243
fair_result_common_score.py	26	1	97%	41
fair_result_evaluation_criterium.py	51	2	96%	70, 176
fair_result_evaluation_criterium_requirements.py	47	47	0%	3–168
fair_results.py	97	13	91%	113, 134, 155, 176, 197, 218, 239, 260, 281, 302, 323, 344, 365
formal_metadata.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
formal_metadata_output.py	13	3	80%	21–23, 34
formal_metadata_output_inner.py	36	7	83%	50, 71, 91–95, 116
harvest_results.py	27	9	76%	27–31, 42, 52, 63, 73, 84
harvest_results_metadata.py	54	21	74%	42–64, 75, 85, 96, 106, 117, 127, 138, 148, 159, 169, 180, 190, 201
identifier_included.py	91	16	82%	98, 118–121, 141–144, 164–167, 208–214, 235, 300
identifier_included_output.py	20	1	96%	39
identifier_included_output_inner.py	19	6	76%	24–27, 38, 48, 59
license.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
license_output.py	13	3	80%	21–23, 34
license_output_inner.py	33	1	98%	44
metadata_preserved.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
metadata_preserved_output.py	22	5	77%	38, 58–67
metric.py	82	33	73%	54–88, 99, 109, 120, 130, 141, 151, 162, 172, 183, 193, 204, 214, 225, 235, 246, 256, 267, 277, 288, 298, 309
metrics.py	27	9	76%	27–31, 42, 52, 63, 73, 84
output_core_metadata_found.py	12	3	79%	20–22, 33
output_search_mechanisms.py	29	6	80%	41, 61–67, 88
persistence.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
persistence_output.py	20	1	96%	39
persistence_output_inner.py	40	1	98%	54
related_resource.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
related_resource_output.py	13	1	93%	34
related_resource_output_inner.py	26	9	75%	26–30, 41, 51, 62, 72, 83
searchable.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
searchable_output.py	20	1	96%	39
semantic_vocabulary.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
semantic_vocabulary_output.py	13	3	80%	21–23, 34
semantic_vocabulary_output_inner.py	26	3	92%	41, 62, 83
standardised_protocol_data.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
standardised_protocol_data_output.py	19	2	92%	38, 59
standardised_protocol_metadata.py	91	13	85%	101, 121–124, 144–147, 167–170, 213, 238, 303
standardised_protocol_metadata_output.py	19	2	92%	38, 59
uniqueness.py	91	13	85%	98, 118–121, 141–144, 164–167, 210, 235, 300
uniqueness_output.py	26	1	97%	41
TOTAL	9585	2794	67%

Tests	Skipped	Failures	Errors	Time
17	0 💤	0 ❌	0 🔥	26.219s ⏱️