try to fix docs and pre-commit

.github/workflows/ci.yml

@@ -27,7 +27,7 @@ jobs:
 
     - name: Install python dependencies
       run: |
-        pip install .[dev]
+        pip install .[docs]
 
     - name: Install Latex compiler
       run: |

.pre-commit-config.yaml

@@ -25,18 +25,14 @@ repos:
         )$
     args: ['-i']
 
-
-- repo: local
+- repo: https://github.com/pycqa/pylint
+  rev: pylint-2.8.0
   hooks:
-
   - id: pylint
-    name: pylint
-    entry: pylint
-    verbose: true
-    types: [python]
-    language: system
     exclude: '^(docs/)|(examples/)|(fuji_server/models/)'
 
+- repo: local
+  hooks:
   - id: version-number
     name: Check version numbers
     entry: python ./utils/validate_version_consistency.py

fuji_server/controllers/fair_metric_controller.py

@@ -1,4 +1,8 @@
 # -*- coding: utf-8 -*-
+"""
+FAIR Metric controller.
+"""
+# -*- coding: utf-8 -*-
 ################################################################################
 # MIT License
 #
@@ -26,8 +30,7 @@
 
 
 def get_metrics():  # noqa: E501
-    """Return all metrics and their definitions
-     # noqa: E501
+    """Return all metrics and their definitions.
     :rtype: Metrics
     """
     response = Preprocessor.get_metrics()

pyproject.toml

@@ -80,11 +80,12 @@ pytest-cov = {version = "^3.0.0", optional = true}
 sphinx = {version = "^4.2.0", optional = true}
 docutils = {version =">=0.14,<0.18", optional = true}
 sphinx-rtd-theme = {version = "^1.0.0", optional = true}
+myst-parser = {version= "^0.16.1", optional = true}
 
 [tool.poetry.extras]
 report = ["bokeh", "jupyter"]
 testing = ["yapf", "pytest", "pre-commit", "pytest-cov", "pylint"] 
-docs = ["sphinx-rtd-theme", "sphinx", "docutils"]
+docs = ["sphinx-rtd-theme", "sphinx", "docutils", "myst-parser"]
 dev = ["yapf", "pytest", "pre-commit", "pytest-cov", "pylint", "sphinx-rtd-theme", "sphinx", "docutils"]