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Strand specific reads and new UMI mode for single cell transcriptomics
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@pmelsted pmelsted released this 03 Jun 21:45
· 956 commits to master since this release
v0.43.0
a231803

Changes from v0.42.5

quant mode:

Quantification can now be run in strand specific mode. The experiment can either be --fr-stranded, when the first read is on the forward strand or --rf-stranded
kallisto_mac-v0.43.0.tar.gz
when the first read is on the second strand.

pseudo mode:

  • Improved multithreading when working with single cell data.
  • A new UMI mode has been added which allows for efficient processing of UMI labelled single cell data.
  • Sparse output for batch mode.
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